Ch3: wrangling #76
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I took another crack at this! I moved the discussion of chaining to the intro chapter and have re-organized so that |
trevorcampbell
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Dec 24, 2022
| @@ -754,7 +581,7 @@ lang_home_tidy | |||
| ``` | |||
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Just above this: lang_home_tidy.columns = [....] is not explained at all. What is going on there? Do we need to do that any time we pivot?
(also if we're renaming columns, we taught students how to do that in Ch 1 -- we should follow that example for consistency)
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reset_index is also not explained at all
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added the text below. See what you think!
source/wrangling.md
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| and the other will contain the counts of Canadians | ||
| that speak each language most at work for each region. | ||
| Next we'll use `.str.split` to split the `value` column into two columns. | ||
| How it works is that it takes a single string and splits it into multiple values |
source/wrangling.md
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| that speak each language most at work for each region. | ||
| Next we'll use `.str.split` to split the `value` column into two columns. | ||
| How it works is that it takes a single string and splits it into multiple values | ||
| based on the character you tell it to split on. For example: |
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avoid colon before code block
| @@ -843,7 +676,7 @@ tidy_lang | |||
| ``` | |||
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again, lots of unexplained stuff going on above. rename and drop, concat, etc.
If we can simplify this code, we should
If we cannot (or can only to a small extent), we need to explain everything that is going on here in far more detail
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It's often a good idea to "look at the output" of a partial operation, go "oh man there's something wrong now!" and then fix it. This is way less mystical for students, because they see individually why each step is happening.
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I broke this up into a few steps starting at 750. See if you think that is an improvement
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An alternative to concat + rename is to assign directly to two columns in the dataframe:
lang_messy_longer[["most_at_home", "most_at_work"]] = lang_messy_longer["value"].str.split("/", expand=True)I think this is a bit easier to read myself (after showing them the output from the right hand expression once first), but if we want to make a point of showing concat because we think it is generally useful then I think the current way looks good.
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👍 I like your suggestion @joelostblom: please feel free to change
source/wrangling.md
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| @@ -843,7 +676,7 @@ tidy_lang | |||
| ``` | |||
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| ```{code-cell} ipython3 | |||
| tidy_lang.dtypes | |||
| tidy_lang.info() | |||
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Do we need to print info here? or is the table print above enough?
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lheagy
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Jan 2, 2023
source/intro.md
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| ) | ||
| ``` | ||
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| What just happened? The code above starts with parentheses `()` and is split over multiple lines. |
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added this paragraph here. See if you think this does the trick!
lheagy
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Jan 2, 2023
source/wrangling.md
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| lang_messy = pd.read_csv("data/region_lang_top5_cities_messy.csv") | ||
| lang_messy_longer = lang_messy.melt( | ||
| id_vars=["category", "language"], | ||
| var_name="region", | ||
| value_name="value", | ||
| ) | ||
| tidy_lang_obj = ( | ||
| pd.concat( | ||
| (lang_messy_longer, lang_messy_longer["value"].str.split("/", expand=True)), | ||
| axis=1, | ||
| ) | ||
| .rename(columns={0: "most_at_home", 1: "most_at_work"}) | ||
| .drop(columns=["value"]) | ||
| ) |
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I am not sure this is critical to repeat. We could just pick up with official_langs?
But I can also appreciate that it might be useful to revisit and see it all together
lheagy
commented
Jan 2, 2023
| are core to most data analyses. We summarize them in | ||
| {numref}`tab:datastructure-table`. There are several other data structures in the Python programming | ||
| language (*e.g.,* matrices), but these are beyond the scope of this book. | ||
| ### Data structures in Python |
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This may not need its own title, but I found it helpful. Feel free to remove if you think it is best to flow from the content about DataFrames above
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I think this title is helpful so I would vote for keeping it.
lheagy
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Jan 2, 2023
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| to represent numbers and perform arithmetic. Integers have no decimals while floats contain decimals. | ||
| Booleans are variables that can only take on one of two values: True or False. | ||
| Strings are used to represent data that should | ||
| be thought of as "text", such as words, names, paths, URLs, and more. | ||
| A `NoneType` is a special type in Python that is used to indicate no-value; this can occur when | ||
| you have missing data. |
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added this per comment below
joelostblom
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Jan 4, 2023
| @@ -152,45 +114,32 @@ data set. There are 13 entities in the data set in total, corresponding to the | |||
| A data frame storing data regarding the population of various regions in Canada. In this example data frame, the row that corresponds to the observation for the city of Vancouver is colored yellow, and the column that corresponds to the population variable is colored blue. | |||
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It would be nice if this image also highlighted what a value is, for both R and Py
| are core to most data analyses. We summarize them in | ||
| {numref}`tab:datastructure-table`. There are several other data structures in the Python programming | ||
| language (*e.g.,* matrices), but these are beyond the scope of this book. | ||
| ### Data structures in Python |
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I think this title is helpful so I would vote for keeping it.
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| There are many ways a tabular data set can be organized. This chapter will focus | ||
| on introducing the **tidy data** format of organization and how to make your raw |
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Suggested change
| There are many ways a tabular data set can be organized. This chapter will focus | |
| on introducing the **tidy data** format of organization and how to make your raw | |
| There are many ways a tabular data set can be organized. The data frames we have looked at so far | |
| have all been using the **tidy data** format. This chapter will focus on introducing this type of | |
| data frame format of organization and walk through how to make your raw |
I think the start of this tidy data section is repetition of the "What is a data frame" section where we already introduced the concept of rows, columns, and variables. Maybe we can keep only one of these illustrations and start this section off by referring to the previous one as in my suggestion above?
| What if you want to calculate summary statistics on an entire dataframe? Well, | ||
| it turns out that the functions in {numref}`tab:basic-summary-statistics` | ||
| can be applied to a whole data frame! | ||
| For example, we can ask for the number of rows that each column has using `count`. |
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Hmmm, is this a useful thing to show? Doesn't data frames require that all column have the same number of rows so we would use info or shape to get the number of rows in the data frame instead?
lheagy
commented
Jan 4, 2023
source/wrangling.md
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| and region. | ||
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| This new data frame has the same `region` column as the `english_lang` data frame. The order of | ||
| the cities is different, but that is okay, we can use the `merge` function in `pandas` to say |
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note that I added the introduction of merge here. It seems like a natural example but was not in the previous version, so please see what you think
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more wrangling more better!
Co-authored-by: Joel Ostblom <[email protected]>
Co-authored-by: Joel Ostblom <[email protected]>
This was referenced Jan 4, 2023
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* welcome (#74) * update the welcome page to indicate this is the python version, include links to the R version * minor edits (newline for better diffs) Co-authored-by: Trevor Campbell <[email protected]> * put headings on the table of contents for easier navigation (#75) * Update metadata and add chapter numbering (#44) * Update _config.yml * Update repo and branch info * Make some visible changes * Include packages we actually use and updated jupyterbook to fix netlify * Test rebuilding notebooks again * Fix typo * Update ToC * Add ibis * Always execute all notebooks * Delete requirements.txt * Update source/_config.yml * Update source/_config.yml * Change path and branch * Increase timeout * Update _config.yml (#90) * Ch3: wrangling (#76) * wip on ch3 * working on wrangling chapter * move chaining content to the intro * update content on summary statistics * update the disucssion on apply * remove the discussion on What is a List * move the assign content to the very end * minor wordsmithing on welcome page * edited learning objs in ch1 for new chaining * update discussion on chaining, edits from Trevor * update discussion of split * remove unnecessary call to File: dir Node: Top This is the top of the INFO tree This (the Directory node) gives a menu of major topics. 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Expand environment variables. * gettext: (gettext). GNU gettext utilities. * gettextize: (gettext)gettextize Invocation. Prepare a package for gettext. * msgattrib: (gettext)msgattrib Invocation. Select part of a PO file. * msgcat: (gettext)msgcat Invocation. Combine several PO files. * msgcmp: (gettext)msgcmp Invocation. Compare a PO file and template. * msgcomm: (gettext)msgcomm Invocation. Match two PO files. * msgconv: (gettext)msgconv Invocation. Convert PO file to encoding. * msgen: (gettext)msgen Invocation. Create an English PO file. * msgexec: (gettext)msgexec Invocation. Process a PO file. * msgfilter: (gettext)msgfilter Invocation. Pipe a PO file through a filter. * msgfmt: (gettext)msgfmt Invocation. Make MO files out of PO files. * msggrep: (gettext)msggrep Invocation. Select part of a PO file. * msginit: (gettext)msginit Invocation. Create a fresh PO file. * msgmerge: (gettext)msgmerge Invocation. Update a PO file from template. * msgunfmt: (gettext)msgunfmt Invocation. Uncompile MO file into PO file. * msguniq: (gettext)msguniq Invocation. Unify duplicates for PO file. * ngettext: (gettext)ngettext Invocation. Translate a message with plural. * xgettext: (gettext)xgettext Invocation. Extract strings into a PO file. The Algorithmic Language Scheme * Guile Reference: (guile). The Guile reference manual. * R5RS: (r5rs). The Revised(5) Report on Scheme. * take care of colons preceding code blocks * take care of chapter references * add discussion of lists and dicts * add table and discussion on basic data structures in python: * add description of info * some general cleanup in apply, assign * typo fix in the intro * a couple of type fixes: * polish chaining/multiline exps * polish ch3 up to and incl tidy data * polish indexing * more polish ch3 * fix python exercises link * more on groupby * improve groupy and discussion of lambda functions * try re-ordering the assign and apply content * global find replace to remove . in naming conventions * caption on fig24 fixed * polish up to apply * cleanup through Using to create new columns * through the summery * add :tags: [output_scroll] for large code outputs, change figure types * trim vertical whitespace on figures: * Update source/wrangling.md Co-authored-by: Joel Ostblom <[email protected]> * Apply suggestions from code review Co-authored-by: Joel Ostblom <[email protected]> * polishing ch3 * final polish on wrangling * final polish on ch3 joel comments Co-authored-by: Trevor Campbell <[email protected]> Co-authored-by: Joel Ostblom <[email protected]> * added altair_saver extension * update build_html.sh script with new docker image * Ch4: Viz (#77) * code formatting for viz * update viz chapter * updating the viz chapter * comments addressed through faithful dataset * more progress on the viz chapter (part way through morley data) * add back code to create the csv for mauna_loa * a couple minor typo fixes * polishing ch4 * minor polish on ch4 * code tags in learning objs * polish on ch4, fixed number -> percentage in figure labels * re-added other filetypes... * better line formatting in saving section * ignore altair warnings; committed faithful plots * moved faithful plots to img/ * done polishing ch4 Co-authored-by: Trevor Campbell <[email protected]> * removed unused material * Front matter (#96) * preface python * remove foreword * added editors page * fix appendix,references * added py acks * minor ed * Update editors.md add Lindsey bio * Add joels bio Co-authored-by: Lindsey Heagy <[email protected]> Co-authored-by: Joel Ostblom <[email protected]> * Add jupyterlab help section (#101) * Ch1 fig cleanup (#99) * first figures in ch1: * code figures for ch1, including ppt to edit them * update figure sizes * remove old lingering image * removed hidden pptx cache file Co-authored-by: Trevor Campbell <[email protected]> * Ch2 fig cleanup (#102) * update output scrolling for ch2 * update scrolling of large output tables * Ch3 fig cleanup (#103) * figure polishing for ch3 * more ch3 figures Co-authored-by: Trevor Campbell <[email protected]> Co-authored-by: Joel Ostblom <[email protected]> Co-authored-by: GitHub Action <[email protected]>
trevorcampbell
added a commit
that referenced
this pull request
Jan 7, 2023
* welcome (#74) * update the welcome page to indicate this is the python version, include links to the R version * minor edits (newline for better diffs) Co-authored-by: Trevor Campbell <[email protected]> * put headings on the table of contents for easier navigation (#75) * Update metadata and add chapter numbering (#44) * Update _config.yml * Update repo and branch info * Make some visible changes * Include packages we actually use and updated jupyterbook to fix netlify * Test rebuilding notebooks again * Fix typo * Update ToC * Add ibis * Always execute all notebooks * Delete requirements.txt * Update source/_config.yml * Update source/_config.yml * Change path and branch * Increase timeout * Update _config.yml (#90) * Ch3: wrangling (#76) * wip on ch3 * working on wrangling chapter * move chaining content to the intro * update content on summary statistics * update the disucssion on apply * remove the discussion on What is a List * move the assign content to the very end * minor wordsmithing on welcome page * edited learning objs in ch1 for new chaining * update discussion on chaining, edits from Trevor * update discussion of split * remove unnecessary call to File: dir Node: Top This is the top of the INFO tree This (the Directory node) gives a menu of major topics. Typing "d" returns here, "q" exits, "?" lists all INFO commands, "h" gives a primer for first-timers, "mEmacs<Return>" visits the Emacs topic, etc. In Emacs, you can click mouse button 2 on a menu item or cross reference to select it. --- PLEASE ADD DOCUMENTATION TO THIS TREE. (See INFO topic first.) --- * Menu: The list of major topics begins on the next line. Emacs * Ada mode: (ada-mode). The GNU Emacs mode for editing Ada. * Autotype: (autotype). Convenient features for text that you enter frequently in Emacs. * CC Mode: (ccmode). Emacs mode for editing C, C++, Objective-C, Java, Pike, and IDL code. * CL: (cl). Partial Common Lisp support for Emacs Lisp. * Dired-X: (dired-x). Dired Extra Features. * EUDC: (eudc). A client for directory servers (LDAP, PH) * Ebrowse: (ebrowse). A C++ class browser for Emacs. * Ediff: (ediff). A visual interface for comparing and merging programs. * Emacs: (emacs). The extensible self-documenting text editor. * Emacs FAQ: (efaq). Frequently Asked Questions about Emacs. * Emacs MIME: (emacs-mime). The MIME de/composition library. * Eshell: (eshell). A command shell implemented in Emacs Lisp. * Forms: (forms). Emacs package for editing data bases by filling in forms. * Gnus: (gnus). The newsreader Gnus. * IDLWAVE: (idlwave). Major mode and shell for IDL and WAVE/CL files. * MH-E: (mh-e). Emacs interface to the MH mail system. * Message: (message). Mail and news composition mode that goes with Gnus. * PCL-CVS: (pcl-cvs). Emacs front-end to CVS. * RefTeX: (reftex). Emacs support for LaTeX cross-references and citations. * SC: (sc). Supercite lets you cite parts of messages you're replying to, in flexible ways. * Speedbar: (speedbar). File/Tag summarizing utility. * VIP: (vip). An older VI-emulation for Emacs. * VIPER: (viper). The newest Emacs VI-emulation mode. (also, A VI Plan for Emacs Rescue or the VI PERil.) * Widget: (widget). Documenting the "widget" package used by the Emacs Custom facility. * WoMan: (woman). Browse UN*X Manual Pages `Wo (without) Man'. Texinfo documentation system * Info: (info). Documentation browsing system. Miscellaneous * Screen: (screen). Full-screen window manager. * Standards: (standards). GNU coding standards. GNU admin * Autoconf: (autoconf). Create source code configuration scripts Individual utilities * aclocal: (automake)Invoking aclocal. Generating aclocal.m4 * autoconf: (autoconf)autoconf Invocation. How to create configuration scripts * autoreconf: (autoconf)autoreconf Invocation. Remaking multiple `configure' scripts * autoscan: (autoconf)autoscan Invocation. Semi-automatic `configure.ac' writing * config.status: (autoconf)config.status Invocation. Recreating a configuration * configure: (autoconf)configure Invocation. Configuring a package * ifnames: (autoconf)ifnames Invocation. Listing the conditionals in source code GNU programming tools * automake: (automake). Making Makefile.in's Utilities * Bash: (bash). The GNU Bourne-Again SHell. GNU Packages * Tar: (tar). Making tape (or disk) archives. Individual utilities * tar: (tar)tar invocation. Invoking GNU `tar' Software development * Cpp: (cpp). The GNU C preprocessor. * Cpplib: (cppinternals). Cpplib internals. * gcc: (gcc). The GNU Compiler Collection. * gccinstall: (gccinstall). Installing the GNU Compiler Collection. * gccint: (gccint). Internals of the GNU Compiler Collection. * gfortran: (gfortran). The GNU Fortran Compiler. GNU Libraries * libgomp: (libgomp). GNU OpenMP runtime library Programming & development tools * gdbm_dump: gdbm_dump(gdbm). Dump the GDBM database into a flat file. * gdbm_load: gdbm_load(gdbm). Load the database from a flat file. Utilities GNU libraries * gmp: (gmp). GNU Multiple Precision Arithmetic Library. Software libraries * GnuTLS: (gnutls). GNU Transport Layer Security Library. * GnuTLS-Guile: (gnutls-guile). GNU Transport Layer Security Library. Guile bindings. * libidn2: (libidn2). Internationalized domain names (IDNA2008/TR46) processing. * libtasn1: (libtasn1). Library for Abstract Syntax Notation One (ASN.1). * mpfr: (mpfr). Multiple Precision Floating-Point Reliable Library. GNU Packages * mpc: (mpc)Multiple Precision Complex Library. Development * fftw3: (fftw3). FFTW User's Manual. Individual utilities * aclocal-invocation: (automake)aclocal Invocation. Generating aclocal.m4. * autoconf-invocation: (autoconf)autoconf Invocation. How to create configuration scripts * autoheader: (autoconf)autoheader Invocation. How to create configuration templates * autom4te: (autoconf)autom4te Invocation. The Autoconf executables backbone * automake-invocation: (automake)automake Invocation. Generating Makefile.in. * autoreconf: (autoconf)autoreconf Invocation. Remaking multiple ‘configure’ scripts * autoscan: (autoconf)autoscan Invocation. Semi-automatic ‘configure.ac’ writing * autoupdate: (autoconf)autoupdate Invocation. Automatic update of ‘configure.ac’ * config.status: (autoconf)config.status Invocation. Recreating configurations. * configure: (autoconf)configure Invocation. Configuring a package. * ifnames: (autoconf)ifnames Invocation. Listing conditionals in source. * libtool-invocation: (libtool)Invoking libtool. Running the 'libtool' script. * libtoolize: (libtool)Invoking libtoolize. Adding libtool support. * testsuite: (autoconf)testsuite Invocation. Running an Autotest test suite. Software development * Autoconf: (autoconf). Create source code configuration scripts. * Automake: (automake). Making GNU standards-compliant Makefiles. * Automake-history: (automake-history). History of Automake development. * GNU libtextstyle: (libtextstyle). Output of styled text. * GNU libunistring: (libunistring). Unicode string library. * Libtool: (libtool). Generic shared library support script. Localization * idn2: (libidn2)Invoking idn2. Internationalized Domain Name (IDNA2008/TR46) conversion. Encryption * Nettle: (nettle). A low-level cryptographic library. System Administration * certtool: (gnutls)certtool Invocation. Manipulate certificates and keys. * gnutls-cli: (gnutls)gnutls-cli Invocation. GnuTLS test client. * gnutls-cli-debug: (gnutls)gnutls-cli-debug Invocation. GnuTLS debug client. * gnutls-serv: (gnutls)gnutls-serv Invocation. GnuTLS test server. * psktool: (gnutls)psktool Invocation. Simple TLS-Pre-Shared-Keys manager. * srptool: (gnutls)srptool Invocation. Simple SRP password tool. Libraries * libgpg-error: (gnupg). Error codes and common code for GnuPG. GNU Libraries * libgcrypt: (gcrypt). Cryptographic function library. C++ libraries * autosprintf: (autosprintf). Support for printf format strings in C++. GNU Gettext Utilities * ISO3166: (gettext)Country Codes. ISO 3166 country codes. * ISO639: (gettext)Language Codes. ISO 639 language codes. * autopoint: (gettext)autopoint Invocation. Copy gettext infrastructure. * envsubst: (gettext)envsubst Invocation. Expand environment variables. * gettext: (gettext). GNU gettext utilities. * gettextize: (gettext)gettextize Invocation. Prepare a package for gettext. * msgattrib: (gettext)msgattrib Invocation. Select part of a PO file. * msgcat: (gettext)msgcat Invocation. Combine several PO files. * msgcmp: (gettext)msgcmp Invocation. Compare a PO file and template. * msgcomm: (gettext)msgcomm Invocation. Match two PO files. * msgconv: (gettext)msgconv Invocation. Convert PO file to encoding. * msgen: (gettext)msgen Invocation. Create an English PO file. * msgexec: (gettext)msgexec Invocation. Process a PO file. * msgfilter: (gettext)msgfilter Invocation. Pipe a PO file through a filter. * msgfmt: (gettext)msgfmt Invocation. Make MO files out of PO files. * msggrep: (gettext)msggrep Invocation. Select part of a PO file. * msginit: (gettext)msginit Invocation. Create a fresh PO file. * msgmerge: (gettext)msgmerge Invocation. Update a PO file from template. * msgunfmt: (gettext)msgunfmt Invocation. Uncompile MO file into PO file. * msguniq: (gettext)msguniq Invocation. Unify duplicates for PO file. * ngettext: (gettext)ngettext Invocation. Translate a message with plural. * xgettext: (gettext)xgettext Invocation. Extract strings into a PO file. The Algorithmic Language Scheme * Guile Reference: (guile). The Guile reference manual. * R5RS: (r5rs). The Revised(5) Report on Scheme. * take care of colons preceding code blocks * take care of chapter references * add discussion of lists and dicts * add table and discussion on basic data structures in python: * add description of info * some general cleanup in apply, assign * typo fix in the intro * a couple of type fixes: * polish chaining/multiline exps * polish ch3 up to and incl tidy data * polish indexing * more polish ch3 * fix python exercises link * more on groupby * improve groupy and discussion of lambda functions * try re-ordering the assign and apply content * global find replace to remove . in naming conventions * caption on fig24 fixed * polish up to apply * cleanup through Using to create new columns * through the summery * add :tags: [output_scroll] for large code outputs, change figure types * trim vertical whitespace on figures: * Update source/wrangling.md Co-authored-by: Joel Ostblom <[email protected]> * Apply suggestions from code review Co-authored-by: Joel Ostblom <[email protected]> * polishing ch3 * final polish on wrangling * final polish on ch3 joel comments Co-authored-by: Trevor Campbell <[email protected]> Co-authored-by: Joel Ostblom <[email protected]> * added altair_saver extension * update build_html.sh script with new docker image * Ch4: Viz (#77) * code formatting for viz * update viz chapter * updating the viz chapter * comments addressed through faithful dataset * more progress on the viz chapter (part way through morley data) * add back code to create the csv for mauna_loa * a couple minor typo fixes * polishing ch4 * minor polish on ch4 * code tags in learning objs * polish on ch4, fixed number -> percentage in figure labels * re-added other filetypes... * better line formatting in saving section * ignore altair warnings; committed faithful plots * moved faithful plots to img/ * done polishing ch4 Co-authored-by: Trevor Campbell <[email protected]> * removed unused material * Front matter (#96) * preface python * remove foreword * added editors page * fix appendix,references * added py acks * minor ed * Update editors.md add Lindsey bio * Add joels bio Co-authored-by: Lindsey Heagy <[email protected]> Co-authored-by: Joel Ostblom <[email protected]> * Add jupyterlab help section (#101) * Ch1 fig cleanup (#99) * first figures in ch1: * code figures for ch1, including ppt to edit them * update figure sizes * remove old lingering image * removed hidden pptx cache file Co-authored-by: Trevor Campbell <[email protected]> * Ch2 fig cleanup (#102) * update output scrolling for ch2 * update scrolling of large output tables * Ch3 fig cleanup (#103) * figure polishing for ch3 * more ch3 figures * Jupyter and Version Control (#98) * added jupyter and version control back in * converted bookdown to jupyterbook images in jupyter chapter * jupyterbook index entries in jupyter * fig references to jupyterbook in jupytermd * updated unicode characters in jupyter; added a caveat at the beginning regarding images * initial index and figure template add to version control * R -> Python in version control * fixed figure refs bookdown->jupyterbook in vsn ctl * jupyterbook index style vsn ctl * fixed images in vsn ctl * minor polish * added caveat * Update source/version-control.md * admonitions for caveats Co-authored-by: Lindsey Heagy <[email protected]> * remove the visible call of `glue` in the saving section (#109) * remove the visible call of in the saving section * remove size calculation code Co-authored-by: Trevor Campbell <[email protected]> Co-authored-by: Joel Ostblom <[email protected]> Co-authored-by: GitHub Action <[email protected]>
trevorcampbell
added a commit
that referenced
this pull request
Jan 18, 2023
* welcome (#74) * update the welcome page to indicate this is the python version, include links to the R version * minor edits (newline for better diffs) Co-authored-by: Trevor Campbell <[email protected]> * put headings on the table of contents for easier navigation (#75) * Update metadata and add chapter numbering (#44) * Update _config.yml * Update repo and branch info * Make some visible changes * Include packages we actually use and updated jupyterbook to fix netlify * Test rebuilding notebooks again * Fix typo * Update ToC * Add ibis * Always execute all notebooks * Delete requirements.txt * Update source/_config.yml * Update source/_config.yml * Change path and branch * Increase timeout * Update _config.yml (#90) * Ch3: wrangling (#76) * wip on ch3 * working on wrangling chapter * move chaining content to the intro * update content on summary statistics * update the disucssion on apply * remove the discussion on What is a List * move the assign content to the very end * minor wordsmithing on welcome page * edited learning objs in ch1 for new chaining * update discussion on chaining, edits from Trevor * update discussion of split * remove unnecessary call to File: dir Node: Top This is the top of the INFO tree This (the Directory node) gives a menu of major topics. Typing "d" returns here, "q" exits, "?" lists all INFO commands, "h" gives a primer for first-timers, "mEmacs<Return>" visits the Emacs topic, etc. In Emacs, you can click mouse button 2 on a menu item or cross reference to select it. --- PLEASE ADD DOCUMENTATION TO THIS TREE. (See INFO topic first.) --- * Menu: The list of major topics begins on the next line. Emacs * Ada mode: (ada-mode). The GNU Emacs mode for editing Ada. * Autotype: (autotype). Convenient features for text that you enter frequently in Emacs. * CC Mode: (ccmode). Emacs mode for editing C, C++, Objective-C, Java, Pike, and IDL code. * CL: (cl). Partial Common Lisp support for Emacs Lisp. * Dired-X: (dired-x). Dired Extra Features. * EUDC: (eudc). A client for directory servers (LDAP, PH) * Ebrowse: (ebrowse). A C++ class browser for Emacs. * Ediff: (ediff). A visual interface for comparing and merging programs. * Emacs: (emacs). The extensible self-documenting text editor. * Emacs FAQ: (efaq). Frequently Asked Questions about Emacs. * Emacs MIME: (emacs-mime). The MIME de/composition library. * Eshell: (eshell). A command shell implemented in Emacs Lisp. * Forms: (forms). Emacs package for editing data bases by filling in forms. * Gnus: (gnus). The newsreader Gnus. * IDLWAVE: (idlwave). Major mode and shell for IDL and WAVE/CL files. * MH-E: (mh-e). Emacs interface to the MH mail system. * Message: (message). Mail and news composition mode that goes with Gnus. * PCL-CVS: (pcl-cvs). Emacs front-end to CVS. * RefTeX: (reftex). Emacs support for LaTeX cross-references and citations. * SC: (sc). Supercite lets you cite parts of messages you're replying to, in flexible ways. * Speedbar: (speedbar). File/Tag summarizing utility. * VIP: (vip). An older VI-emulation for Emacs. * VIPER: (viper). The newest Emacs VI-emulation mode. (also, A VI Plan for Emacs Rescue or the VI PERil.) * Widget: (widget). Documenting the "widget" package used by the Emacs Custom facility. * WoMan: (woman). Browse UN*X Manual Pages `Wo (without) Man'. Texinfo documentation system * Info: (info). Documentation browsing system. Miscellaneous * Screen: (screen). Full-screen window manager. * Standards: (standards). GNU coding standards. GNU admin * Autoconf: (autoconf). Create source code configuration scripts Individual utilities * aclocal: (automake)Invoking aclocal. Generating aclocal.m4 * autoconf: (autoconf)autoconf Invocation. How to create configuration scripts * autoreconf: (autoconf)autoreconf Invocation. Remaking multiple `configure' scripts * autoscan: (autoconf)autoscan Invocation. Semi-automatic `configure.ac' writing * config.status: (autoconf)config.status Invocation. Recreating a configuration * configure: (autoconf)configure Invocation. Configuring a package * ifnames: (autoconf)ifnames Invocation. Listing the conditionals in source code GNU programming tools * automake: (automake). Making Makefile.in's Utilities * Bash: (bash). The GNU Bourne-Again SHell. GNU Packages * Tar: (tar). Making tape (or disk) archives. Individual utilities * tar: (tar)tar invocation. Invoking GNU `tar' Software development * Cpp: (cpp). The GNU C preprocessor. * Cpplib: (cppinternals). Cpplib internals. * gcc: (gcc). The GNU Compiler Collection. * gccinstall: (gccinstall). Installing the GNU Compiler Collection. * gccint: (gccint). Internals of the GNU Compiler Collection. * gfortran: (gfortran). The GNU Fortran Compiler. GNU Libraries * libgomp: (libgomp). GNU OpenMP runtime library Programming & development tools * gdbm_dump: gdbm_dump(gdbm). Dump the GDBM database into a flat file. * gdbm_load: gdbm_load(gdbm). Load the database from a flat file. Utilities GNU libraries * gmp: (gmp). GNU Multiple Precision Arithmetic Library. Software libraries * GnuTLS: (gnutls). GNU Transport Layer Security Library. * GnuTLS-Guile: (gnutls-guile). GNU Transport Layer Security Library. Guile bindings. * libidn2: (libidn2). Internationalized domain names (IDNA2008/TR46) processing. * libtasn1: (libtasn1). Library for Abstract Syntax Notation One (ASN.1). * mpfr: (mpfr). Multiple Precision Floating-Point Reliable Library. GNU Packages * mpc: (mpc)Multiple Precision Complex Library. Development * fftw3: (fftw3). FFTW User's Manual. Individual utilities * aclocal-invocation: (automake)aclocal Invocation. Generating aclocal.m4. * autoconf-invocation: (autoconf)autoconf Invocation. How to create configuration scripts * autoheader: (autoconf)autoheader Invocation. How to create configuration templates * autom4te: (autoconf)autom4te Invocation. The Autoconf executables backbone * automake-invocation: (automake)automake Invocation. Generating Makefile.in. * autoreconf: (autoconf)autoreconf Invocation. Remaking multiple ‘configure’ scripts * autoscan: (autoconf)autoscan Invocation. Semi-automatic ‘configure.ac’ writing * autoupdate: (autoconf)autoupdate Invocation. Automatic update of ‘configure.ac’ * config.status: (autoconf)config.status Invocation. Recreating configurations. * configure: (autoconf)configure Invocation. Configuring a package. * ifnames: (autoconf)ifnames Invocation. Listing conditionals in source. * libtool-invocation: (libtool)Invoking libtool. Running the 'libtool' script. * libtoolize: (libtool)Invoking libtoolize. Adding libtool support. * testsuite: (autoconf)testsuite Invocation. Running an Autotest test suite. Software development * Autoconf: (autoconf). Create source code configuration scripts. * Automake: (automake). Making GNU standards-compliant Makefiles. * Automake-history: (automake-history). History of Automake development. * GNU libtextstyle: (libtextstyle). Output of styled text. * GNU libunistring: (libunistring). Unicode string library. * Libtool: (libtool). Generic shared library support script. Localization * idn2: (libidn2)Invoking idn2. Internationalized Domain Name (IDNA2008/TR46) conversion. Encryption * Nettle: (nettle). A low-level cryptographic library. System Administration * certtool: (gnutls)certtool Invocation. Manipulate certificates and keys. * gnutls-cli: (gnutls)gnutls-cli Invocation. GnuTLS test client. * gnutls-cli-debug: (gnutls)gnutls-cli-debug Invocation. GnuTLS debug client. * gnutls-serv: (gnutls)gnutls-serv Invocation. GnuTLS test server. * psktool: (gnutls)psktool Invocation. Simple TLS-Pre-Shared-Keys manager. * srptool: (gnutls)srptool Invocation. Simple SRP password tool. Libraries * libgpg-error: (gnupg). Error codes and common code for GnuPG. GNU Libraries * libgcrypt: (gcrypt). Cryptographic function library. C++ libraries * autosprintf: (autosprintf). Support for printf format strings in C++. GNU Gettext Utilities * ISO3166: (gettext)Country Codes. ISO 3166 country codes. * ISO639: (gettext)Language Codes. ISO 639 language codes. * autopoint: (gettext)autopoint Invocation. Copy gettext infrastructure. * envsubst: (gettext)envsubst Invocation. Expand environment variables. * gettext: (gettext). GNU gettext utilities. * gettextize: (gettext)gettextize Invocation. Prepare a package for gettext. * msgattrib: (gettext)msgattrib Invocation. Select part of a PO file. * msgcat: (gettext)msgcat Invocation. Combine several PO files. * msgcmp: (gettext)msgcmp Invocation. Compare a PO file and template. * msgcomm: (gettext)msgcomm Invocation. Match two PO files. * msgconv: (gettext)msgconv Invocation. Convert PO file to encoding. * msgen: (gettext)msgen Invocation. Create an English PO file. * msgexec: (gettext)msgexec Invocation. Process a PO file. * msgfilter: (gettext)msgfilter Invocation. Pipe a PO file through a filter. * msgfmt: (gettext)msgfmt Invocation. Make MO files out of PO files. * msggrep: (gettext)msggrep Invocation. Select part of a PO file. * msginit: (gettext)msginit Invocation. Create a fresh PO file. * msgmerge: (gettext)msgmerge Invocation. Update a PO file from template. * msgunfmt: (gettext)msgunfmt Invocation. Uncompile MO file into PO file. * msguniq: (gettext)msguniq Invocation. Unify duplicates for PO file. * ngettext: (gettext)ngettext Invocation. Translate a message with plural. * xgettext: (gettext)xgettext Invocation. Extract strings into a PO file. The Algorithmic Language Scheme * Guile Reference: (guile). The Guile reference manual. * R5RS: (r5rs). The Revised(5) Report on Scheme. * take care of colons preceding code blocks * take care of chapter references * add discussion of lists and dicts * add table and discussion on basic data structures in python: * add description of info * some general cleanup in apply, assign * typo fix in the intro * a couple of type fixes: * polish chaining/multiline exps * polish ch3 up to and incl tidy data * polish indexing * more polish ch3 * fix python exercises link * more on groupby * improve groupy and discussion of lambda functions * try re-ordering the assign and apply content * global find replace to remove . in naming conventions * caption on fig24 fixed * polish up to apply * cleanup through Using to create new columns * through the summery * add :tags: [output_scroll] for large code outputs, change figure types * trim vertical whitespace on figures: * Update source/wrangling.md Co-authored-by: Joel Ostblom <[email protected]> * Apply suggestions from code review Co-authored-by: Joel Ostblom <[email protected]> * polishing ch3 * final polish on wrangling * final polish on ch3 joel comments Co-authored-by: Trevor Campbell <[email protected]> Co-authored-by: Joel Ostblom <[email protected]> * added altair_saver extension * update build_html.sh script with new docker image * Ch4: Viz (#77) * code formatting for viz * update viz chapter * updating the viz chapter * comments addressed through faithful dataset * more progress on the viz chapter (part way through morley data) * add back code to create the csv for mauna_loa * a couple minor typo fixes * polishing ch4 * minor polish on ch4 * code tags in learning objs * polish on ch4, fixed number -> percentage in figure labels * re-added other filetypes... * better line formatting in saving section * ignore altair warnings; committed faithful plots * moved faithful plots to img/ * done polishing ch4 Co-authored-by: Trevor Campbell <[email protected]> * removed unused material * Front matter (#96) * preface python * remove foreword * added editors page * fix appendix,references * added py acks * minor ed * Update editors.md add Lindsey bio * Add joels bio Co-authored-by: Lindsey Heagy <[email protected]> Co-authored-by: Joel Ostblom <[email protected]> * Add jupyterlab help section (#101) * Ch1 fig cleanup (#99) * first figures in ch1: * code figures for ch1, including ppt to edit them * update figure sizes * remove old lingering image * removed hidden pptx cache file Co-authored-by: Trevor Campbell <[email protected]> * Ch2 fig cleanup (#102) * update output scrolling for ch2 * update scrolling of large output tables * Ch3 fig cleanup (#103) * figure polishing for ch3 * more ch3 figures * Jupyter and Version Control (#98) * added jupyter and version control back in * converted bookdown to jupyterbook images in jupyter chapter * jupyterbook index entries in jupyter * fig references to jupyterbook in jupytermd * updated unicode characters in jupyter; added a caveat at the beginning regarding images * initial index and figure template add to version control * R -> Python in version control * fixed figure refs bookdown->jupyterbook in vsn ctl * jupyterbook index style vsn ctl * fixed images in vsn ctl * minor polish * added caveat * Update source/version-control.md * admonitions for caveats Co-authored-by: Lindsey Heagy <[email protected]> * remove the visible call of `glue` in the saving section (#109) * remove the visible call of in the saving section * remove size calculation code * trim whitespace from end of line for better diffs (#111) * Chapter 5 production polish (#78) * starting work on ch5+6; categorical type change; remove commented out R code * value counts, class name remap, replace in ch5 * remove warnings * polished ch5+6 up to euclidean dist * minor bugfix * minor bugfix * fixed worksheets link at end of chp * fix minor section heading wording in Ch1 * added nsmallest + note; better chaining for dist comps; removed comments; fixed colors (not working yet) * initial fit and predict polished; model spec -> model object * polishing preprocessing * balancing polished * pipelines * learning objs * mute warnings in ch5 * restore cls2 to main branch * Update classification1.md add output scroll for large table * Update source/classification1.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification1.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification1.md Co-authored-by: Joel Ostblom <[email protected]> * remove random state specificaiton from ch5 * fixed fill plots * Update source/classification1.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification1.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification1.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification1.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification1.md Co-authored-by: Joel Ostblom <[email protected]> * better intro of meshgrid * better warning filtering in chapters 4 and 5 * Update source/classification1.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification1.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification1.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification1.md Co-authored-by: Joel Ostblom <[email protected]> * remove np.number and replace with just 'number' in dtype selection * Update source/classification1.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification1.md Co-authored-by: Joel Ostblom <[email protected]> * properly gluing column names Co-authored-by: Lindsey Heagy <[email protected]> Co-authored-by: Joel Ostblom <[email protected]> * minor fixes post-merge * Update viz.md (#137) * Chapter 6 production polish (#86) * starting work on ch5+6; categorical type change; remove commented out R code * value counts, class name remap, replace in ch5 * remove warnings * polished ch5+6 up to euclidean dist * minor bugfix * minor bugfix * fixed worksheets link at end of chp * fix minor section heading wording in Ch1 * added nsmallest + note; better chaining for dist comps; removed comments; fixed colors (not working yet) * initial fit and predict polished; model spec -> model object * polishing preprocessing * balancing polished * pipelines * learning objs * mute warnings in ch5 * warn mute code; fixed links at end * restore cls2 to main branch * remove caption hack; minor fix to learning objs * Remove caption hack * initial improved seed explanation * random seed section polish done * polished ch6 up to tuning * initial cross val example done * in python -> in scikit * working on cross-val * polished ch6 up to predictor selection * commented out predictor selection * done ch6 except final under/overfit plot * warnings filter in ch6; remove seed hack cell * remove reference to random state in train/test split * minor typesetting .method() vs method * put setup.md back in to fix broken links * Update source/classification2.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification2.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification2.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification2.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification2.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification2.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification2.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification2.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification2.md Co-authored-by: Joel Ostblom <[email protected]> * values -> to_numpy in randomness section * Update source/classification2.md Co-authored-by: Joel Ostblom <[email protected]> * Update source/classification2.md Co-authored-by: Joel Ostblom <[email protected]> * remove code for area plot at the end of ch6 Co-authored-by: Joel Ostblom <[email protected]> * Chapter 7 production polish (#125) * fix exercises link * wip * polished ch7 up to under/overfitting * done polishing ch7 * Update source/regression1.md Co-authored-by: Lindsey Heagy <[email protected]> * Update source/regression1.md Co-authored-by: Lindsey Heagy <[email protected]> * Update source/regression1.md Co-authored-by: Lindsey Heagy <[email protected]> * Update source/regression1.md Co-authored-by: Lindsey Heagy <[email protected]> * Update source/regression1.md Co-authored-by: Lindsey Heagy <[email protected]> * Update source/regression1.md Co-authored-by: Lindsey Heagy <[email protected]> Co-authored-by: Lindsey Heagy <[email protected]> * Chapter 8 production polish (#126) * fix exercises link * polishing ch8 * done polishing ch8 * Update source/regression2.md Co-authored-by: Lindsey Heagy <[email protected]> * Update source/regression2.md Co-authored-by: Lindsey Heagy <[email protected]> * Update source/regression2.md Co-authored-by: Lindsey Heagy <[email protected]> Co-authored-by: Lindsey Heagy <[email protected]> Co-authored-by: Lindsey Heagy <[email protected]> Co-authored-by: Joel Ostblom <[email protected]> Co-authored-by: GitHub Action <[email protected]>
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Another pass at the wrangling chapter. I have summarized comments / questions in #39. This is still going to need some work. I would appreciate input on the comments I made in #39. Feel free to push directly to this branch too!
This PR: