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Release nchs_mortality to production#605

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korlaxxalrok merged 95 commits intoprodcmu-delphi/covidcast-indicators:prodfrom

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Dec 7, 2020

Commits

Commits on Nov 20, 2020

• Get CHC to pass pydocstyle

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• Add to makefile

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• Get utils to pass pydocstyle

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• Get quidel_covidtest to pass pydocstyle

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• Add pydocstyle to makefile

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Commits on Nov 21, 2020

• Correct makefile

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• Get quidel to pass pydocstyle

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Commits on Nov 23, 2020

• Check for duplicate rows

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• Update plans.md to remove duplicate rows task

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Commits on Nov 24, 2020

• move parameter checking to be separate from other validation

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• remove vestigial checks

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• refactor of validate into a report

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• documentation of report

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• plug report logic into the running

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• adding pylintrc to validator package

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• pylint compliance

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• add pylintrc

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Commits on Nov 25, 2020

• Test Fix and Documentation Update

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• Add:

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Commits on Nov 30, 2020

• refactor of validator for lint compliance

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• change order of super().__init__() call to preserve error function messages

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• trailing newline to pylintrc

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• add TODO for last lint error

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• Merge branch 'main' of github.com:cmu-delphi/covidcast-indicators into validator

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Commits on Dec 1, 2020

• get validation pylint compliant

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• Merge branch 'main' of github.com:cmu-delphi/covidcast-indicators into validator

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• Merge branch 'validator' into validation_report

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• fix bug with missing argument to refactored function

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• tests for utils

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• constants capitalization

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• Use production ingestion directory

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• tests for datafetching

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• Add constants for cli

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• Load files for cli

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• Adjust pipeline

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• Merge branch 'main' of https://github.com/cmu-delphi/covidcast-indicators into chng-dv

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• Merge branch 'validator' into validation_report

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• Fix linting

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• Update tests

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• Modularized run

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• params refactor

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• update backfill docstring

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Commits on Dec 2, 2020

• Merge pull request #586 from cmu-delphi/release-nchs_mortality

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• only iterate over geo,signal combos available on covidcast

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• Merge pull request #587 from cmu-delphi/chng-dv

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• Merge branch 'main' into chc-docs

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• Fix conflicts and new lints

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• remove trailing whitespace

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• Update CHNG production params to include CLI inputs

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• Merge pull request #569 from cmu-delphi/chc-docs

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• Merge pull request #592 from cmu-delphi/chng/update-production-params

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• Merge pull request #572 from cmu-delphi/quidelpydocs

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• Merge pull request #571 from cmu-delphi/quidel-pydocs

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• Update _delphi_utils_python/delphi_utils/archive.py

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• Update _delphi_utils_python/delphi_utils/archive.py

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• Update _delphi_utils_python/delphi_utils/archive.py

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• Update _delphi_utils_python/delphi_utils/archive.py

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• Timezone issue described in #593

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• Merge pull request #570 from cmu-delphi/utils-docs

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Commits on Dec 3, 2020

• SirCAL default config: Add new signals, missing signals, and update max ages

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• Update params template

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• Change Ansible params also

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• Merge pull request #576 from JedGrabman/dev-duplicate-rows

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• change super().__init__() call to get the correct error message printed

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• move check increment to outside the loop:

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• Merge pull request #597 from cmu-delphi/chng-params

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• Add diff bucket to params

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• Merge pull request #598 from cmu-delphi/update-nchs_mortality

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• Add staging api proxy to Ansible inventory

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• Add new Ansible and template

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• Add step to Jenkinsfile, update file name

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• Add specific remote user for this playbook

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• Merge pull request #596 from cmu-delphi/sircal/add-new-signals

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• Merge pull request #595 from cmu-delphi/chng-time

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• Merge pull request #578 from sgsmob/validator

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• Update ansible/templates/staging-api-match-list.j2

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• Update signal list

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• Accept changes

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• Merge pull request #599 from cmu-delphi/add-ansible-to-set-api-match-list

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• Update Jenkinsfile, add shell wrapper for Ansible playbook

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Commits on Dec 4, 2020

• Merge branch 'main' of github.com:cmu-delphi/covidcast-indicators into validation_report

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• Merge branch 'main' of github.com:cmu-delphi/covidcast-indicators into validator_combos

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• Merge pull request #602 from cmu-delphi/fix-staging-api-deploy

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• Fix daily archive differ removing None files

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• Fix file permissions

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• change name of unsuppressed errors

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• change polarity of if/else to be positive

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• Merge pull request #604 from cmu-delphi/fix-staging-api-deploy

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• Merge pull request #588 from sgsmob/validator_combos

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• Merge pull request #603 from cmu-delphi/fix-nchs_mortality

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Commits on Dec 5, 2020

• Merge branch 'main' of github.com:cmu-delphi/covidcast-indicators into validation_report

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• add_raised_warning documentation

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• duplicate rows to use report

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• tests for reports

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Commits on Dec 7, 2020

• Merge pull request #589 from sgsmob/validation_report

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