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Implement genetic algorithm for optimizing continuous functions #11670

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134 changes: 134 additions & 0 deletions genetic_algorithm/genetic_algorithm_optimization.py
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import random
import numpy as np
from concurrent.futures import ThreadPoolExecutor


# Parameters

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genetic_algorithm/genetic_algorithm_optimization.py:1:1: I001 Import block is un-sorted or un-formatted
N_POPULATION = 100 # Population size
N_GENERATIONS = 500 # Maximum number of generations
N_SELECTED = 50 # Number of parents selected for the next generation
MUTATION_PROBABILITY = 0.1 # Mutation probability
CROSSOVER_RATE = 0.8 # Probability of crossover
SEARCH_SPACE = (-10, 10) # Search space for the variables


# Random number generator
rng = np.random.default_rng()


class GeneticAlgorithm:
def __init__(

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Please provide return type hint for the function: __init__. If the function does not return a value, please provide the type hint as: def function() -> None:

self,
function,

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Please provide type hint for the parameter: function

bounds,

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Please provide type hint for the parameter: bounds

population_size,

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Please provide type hint for the parameter: population_size

generations,

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Please provide type hint for the parameter: generations

mutation_prob,

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Please provide type hint for the parameter: mutation_prob

crossover_rate,

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Please provide type hint for the parameter: crossover_rate

maximize=True,

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Please provide type hint for the parameter: maximize

):
self.function = function # Target function to optimize
self.bounds = bounds # Search space bounds (for each variable)
self.population_size = population_size
self.generations = generations
self.mutation_prob = mutation_prob
self.crossover_rate = crossover_rate
self.maximize = maximize
self.dim = len(bounds) # Dimensionality of the function (number of variables)

# Initialize population
self.population = self.initialize_population()

def initialize_population(self):

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Please provide return type hint for the function: initialize_population. If the function does not return a value, please provide the type hint as: def function() -> None:

As there is no test file in this pull request nor any test function or class in the file genetic_algorithm/genetic_algorithm_optimization.py, please provide doctest for the function initialize_population

# Generate random initial population within the search space using the generator
return [
rng.uniform(low=self.bounds[i][0], high=self.bounds[i][1], size=self.dim)
for i in range(self.population_size)
]

def fitness(self, individual):

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Please provide return type hint for the function: fitness. If the function does not return a value, please provide the type hint as: def function() -> None:

As there is no test file in this pull request nor any test function or class in the file genetic_algorithm/genetic_algorithm_optimization.py, please provide doctest for the function fitness

Please provide type hint for the parameter: individual

# Calculate the fitness value (function value)
value = self.function(*individual)
return value if self.maximize else -value # If minimizing, invert the fitness

def select_parents(self, population_score):

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Please provide return type hint for the function: select_parents. If the function does not return a value, please provide the type hint as: def function() -> None:

As there is no test file in this pull request nor any test function or class in the file genetic_algorithm/genetic_algorithm_optimization.py, please provide doctest for the function select_parents

Please provide type hint for the parameter: population_score

# Select top N_SELECTED parents based on fitness
population_score.sort(key=lambda x: x[1], reverse=True)

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Please provide descriptive name for the parameter: x

return [ind for ind, _ in population_score[:N_SELECTED]]

def crossover(self, parent1, parent2):

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Please provide return type hint for the function: crossover. If the function does not return a value, please provide the type hint as: def function() -> None:

As there is no test file in this pull request nor any test function or class in the file genetic_algorithm/genetic_algorithm_optimization.py, please provide doctest for the function crossover

Please provide type hint for the parameter: parent1

Please provide type hint for the parameter: parent2

# Perform uniform crossover
if random.random() < self.crossover_rate:
cross_point = random.randint(1, self.dim - 1)
child1 = np.concatenate((parent1[:cross_point], parent2[cross_point:]))
child2 = np.concatenate((parent2[:cross_point], parent1[cross_point:]))
return child1, child2
return parent1, parent2

def mutate(self, individual):

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Please provide return type hint for the function: mutate. If the function does not return a value, please provide the type hint as: def function() -> None:

As there is no test file in this pull request nor any test function or class in the file genetic_algorithm/genetic_algorithm_optimization.py, please provide doctest for the function mutate

Please provide type hint for the parameter: individual

# Apply mutation to an individual using the new random generator
for i in range(self.dim):
if random.random() < self.mutation_prob:
individual[i] = rng.uniform(self.bounds[i][0], self.bounds[i][1])
return individual

def evaluate_population(self):

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Please provide return type hint for the function: evaluate_population. If the function does not return a value, please provide the type hint as: def function() -> None:

As there is no test file in this pull request nor any test function or class in the file genetic_algorithm/genetic_algorithm_optimization.py, please provide doctest for the function evaluate_population

# Multithreaded evaluation of population fitness
with ThreadPoolExecutor() as executor:
return list(
executor.map(lambda ind: (ind, self.fitness(ind)), self.population)
)

def evolve(self):

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Please provide return type hint for the function: evolve. If the function does not return a value, please provide the type hint as: def function() -> None:

As there is no test file in this pull request nor any test function or class in the file genetic_algorithm/genetic_algorithm_optimization.py, please provide doctest for the function evolve

for generation in range(self.generations):
# Evaluate population fitness (multithreaded)
population_score = self.evaluate_population()

# Check the best individual
best_individual = max(population_score, key=lambda x: x[1])[0]

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Please provide descriptive name for the parameter: x

best_fitness = self.fitness(best_individual)

# Select parents for next generation
parents = self.select_parents(population_score)
next_generation = []

# Generate offspring using crossover and mutation
for i in range(0, len(parents), 2):
parent1, parent2 = parents[i], parents[(i + 1) % len(parents)]
child1, child2 = self.crossover(parent1, parent2)
next_generation.append(self.mutate(child1))
next_generation.append(self.mutate(child2))

# Ensure population size remains the same
self.population = next_generation[: self.population_size]

if generation % 10 == 0:
print(f"Generation {generation}: Best Fitness = {best_fitness}")

return best_individual


# Example target function for optimization
def target_function(x, y):

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Please provide return type hint for the function: target_function. If the function does not return a value, please provide the type hint as: def function() -> None:

As there is no test file in this pull request nor any test function or class in the file genetic_algorithm/genetic_algorithm_optimization.py, please provide doctest for the function target_function

Please provide type hint for the parameter: x

Please provide descriptive name for the parameter: x

Please provide type hint for the parameter: y

Please provide descriptive name for the parameter: y

return x**2 + y**2 # Simple parabolic surface (minimization)


# Set bounds for the variables (x, y)
bounds = [(-10, 10), (-10, 10)] # Both x and y range from -10 to 10


# Instantiate and run the genetic algorithm
ga = GeneticAlgorithm(
function=target_function,
bounds=bounds,
population_size=N_POPULATION,
generations=N_GENERATIONS,
mutation_prob=MUTATION_PROBABILITY,
crossover_rate=CROSSOVER_RATE,
maximize=False, # Minimize the function
)


best_solution = ga.evolve()
print(f"Best solution found: {best_solution}")
print(f"Best fitness (minimum value of function): {target_function(*best_solution)}")
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