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Nov 25, 2020
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79 changes: 79 additions & 0 deletions .github/workflows/pytest.yml
Original file line number Diff line number Diff line change
@@ -0,0 +1,79 @@
name: pytest

on:
pull_request:
push:
branches: [master]

jobs:
pytest:
strategy:
matrix:
python-version: ["3.6"]
os: [ubuntu-18.04]
floatx: [float32, float64]
test-subset:
- |
--ignore=pymc3/tests/test_examples.py
--ignore=pymc3/tests/test_distributions_random.py
--ignore=pymc3/tests/test_variational_inference.py
--ignore=pymc3/tests/test_shared.py
--ignore=pymc3/tests/test_smc.py
--ignore=pymc3/tests/test_updates.py
--ignore=pymc3/tests/test_posteriors.py
--ignore=pymc3/tests/test_sampling.py
--ignore=pymc3/tests/test_parallel_sampling.py
--ignore=pymc3/tests/test_dist_math.py
--ignore=pymc3/tests/test_distribution_defaults.py
--ignore=pymc3/tests/test_distributions_timeseries.py
--ignore=pymc3/tests/test_random.py
--ignore=pymc3/tests/test_gp.py
--ignore=pymc3/tests/test_shape_handling
--ignore=pymc3/tests/test_quadpotential.py
- |
pymc3/tests/test_distributions_random.py
pymc3/tests/test_shared.py
pymc3/tests/test_smc.py
pymc3/tests/test_sampling.py
pymc3/tests/test_parallel_sampling.py
pymc3/tests/test_dist_math.py
pymc3/tests/test_distribution_defaults.py
pymc3/tests/test_distributions_timeseries.py
pymc3/tests/test_random.py
- |
pymc3/tests/test_examples.py
pymc3/tests/test_posteriors.py
pymc3/tests/test_gp.py
pymc3/tests/test_quadpotential.py
- |
pymc3/tests/test_variational_inference.py
pymc3/tests/test_updates.py
pymc3/tests/test_shape_handling.py
runs-on: ${{ matrix.os }}
env:
TEST_SUBSET: ${{ matrix.test-subset }}
THEANO_FLAGS: floatX=${{ matrix.floatx }},gcc.cxxflags='-march=native'
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v2
- name: Cache conda
uses: actions/cache@v1
env:
# Increase this value to reset cache if etc/example-environment.yml has not changed
CACHE_NUMBER: 0
with:
path: ~/conda_pkgs_dir
key:
${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
hashFiles('environment-dev.yml') }}
- uses: conda-incubator/setup-miniconda@v2
with:
activate-environment: testenv
channel-priority: strict
environment-file: environment-dev.yml
use-only-tar-bz2: true # IMPORTANT: This needs to be set for caching to work properly!
- run: |
conda activate testenv
python -m pytest -v --cov=pymc3 --cov-report=xml --cov-report term --durations=50 $TEST_SUBSET
68 changes: 0 additions & 68 deletions .travis.yml

This file was deleted.

7 changes: 0 additions & 7 deletions environment-dev.yml
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,6 @@ channels:
- conda-forge
- defaults
dependencies:
- python=3.6
- arviz>=0.9
- theano-pymc==1.0.11
- numpy>=1.13
Expand All @@ -22,9 +21,6 @@ dependencies:
- nose-parameterized>=0.6
- numpydoc>=0.9
- pre-commit>=2.8.0
- pycodestyle>=2.3
- pyflakes>=1.5
- pylint>=1.7
Comment on lines -25 to -27
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remove these (and other formatters/linters) as they're run via pre-commit

- pytest-cov>=2.5
- pytest>=3.0
- recommonmark>=0.4
Expand All @@ -33,12 +29,9 @@ dependencies:
- sphinx>=1.5
- watermark
- parameterized
- black
- ipywidgets
- dataclasses # python_version < 3.7
- contextvars # python_version < 3.7
- mkl-service
- dill
- libblas=*=*mkl
- pip:
- black_nbconvert