fixup so docs work with latest pymc-examples reorg

Author: MarcoGorelli

docs/source/index.rst

@@ -96,7 +96,7 @@
                     </div>
                 </a>
 
-                <a class="ui link card" href="/pymc-examples/notebooks/variational_api_quickstart.html">
+                <a class="ui link card" href="/pymc-examples/examples/variational_inference/variational_api_quickstart.html">
                     <div class="content">
                         <div class="header">Variational Inference</div>
                         <div class="description">Variational inference saves computational cost by turning a problem of integration into one of optimization. PyMC3's variational API supports a number of cutting edge algorithms, as well as minibatch for scaling to large datasets.

docs/source/pymc-examples

@@ -76,7 +76,7 @@
     <div class="ui center aligned text container">
         <img src="https://cdn.rawgit.com/pymc-devs/pymc3/master/docs/logos/svg/PyMC3_banner.svg" />
         <h2>Probabilistic Programming in Python</h2>
-        <a href="pymc-examples/notebooks/api_quickstart.html">
+        <a href="pymc-examples/examples/pymc3_howto/api_quickstart.html">
             <div class="ui huge primary button">Quickstart <i class="right arrow icon"></i></div>
         </a>
     </div>

docs/source/semantic_sphinx/layout.html

@@ -4,12 +4,13 @@
 Modified from the seaborn project, which modified the mpld3 project.
 """
 import base64
-import glob
 import json
 import os
 import runpy
 import shutil
 
+from pathlib import Path
+
 import matplotlib
 
 matplotlib.use("Agg")
@@ -72,8 +73,8 @@ class NotebookGenerator:
     def __init__(self, filename, target_dir):
         self.basename = os.path.basename(filename)
         self.stripped_name = os.path.splitext(self.basename)[0]
-        self.output_html = os.path.join(
-            "..", "pymc-examples", "notebooks", f"{self.stripped_name}.html"
+        self.output_html = str(
+            Path("..") / Path(filename).relative_to(Path.cwd()).with_suffix(".html")
         )
         self.image_dir = os.path.join(target_dir, "_images")
         self.png_path = os.path.join(self.image_dir, f"{self.stripped_name}.png")
@@ -141,7 +142,7 @@ def build_gallery(srcdir, gallery):
     image_dir = os.path.join(target_dir, "_images")
     source_dir = os.path.abspath(
         os.path.join(
-            os.path.dirname(os.path.dirname(srcdir)), "docs", "source", "pymc-examples", "notebooks"
+            os.path.dirname(os.path.dirname(srcdir)), "docs", "source", "pymc-examples", "examples"
         )
     )
     table_of_contents_file = os.path.join(source_dir, TABLE_OF_CONTENTS_FILENAME.format(gallery))
@@ -171,7 +172,7 @@ def build_gallery(srcdir, gallery):
         if basename.find(".rst") < 1:
             filename = os.path.join(source_dir, basename + ".ipynb")
             ex = NotebookGenerator(filename, target_dir)
-            data[ex.stripped_name] = {
+            data[basename] = {
                 "title": ex.pagetitle,
                 "url": os.path.join(os.sep, gallery, ex.output_html),
                 "thumb": os.path.basename(ex.png_path),
@@ -187,7 +188,6 @@ def build_gallery(srcdir, gallery):
     js_file = os.path.join(image_dir, f"gallery_{gallery}_contents.js")
     with open(table_of_contents_file) as toc:
         table_of_contents = toc.read()
-
     js_contents = "Gallery.examples = {}\n{}".format(json.dumps(data), table_of_contents)
 
     with open(js_file, "w") as js: