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Merged
merged 3 commits into from
Jul 5, 2023
Merged

Maintenance #556

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12c14b5
add rtd preview link to PR description
OriolAbril Jul 4, 2023
ed5a0b4
update myst substitution metadata
OriolAbril Jul 4, 2023
a529281
run pre-commit
OriolAbril Jul 4, 2023
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16 changes: 16 additions & 0 deletions .github/workflows/rtd-link-preview.yml
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@@ -0,0 +1,16 @@
name: Read the Docs Pull Request Preview
on:
pull_request_target:
types:
- opened

permissions:
pull-requests: write

jobs:
documentation-links:
runs-on: ubuntu-latest
steps:
- uses: readthedocs/actions/preview@v1
with:
project-slug: "pymc-examples"
2 changes: 1 addition & 1 deletion .jupytext.toml
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notebook_metadata_filter = "substitutions,-jupytext.text_representation.jupytext_version"
notebook_metadata_filter = "myst,-jupytext.text_representation.jupytext_version"
formats = ["ipynb", ".myst.md:myst"]
3 changes: 3 additions & 0 deletions examples/case_studies/conditional_autoregressive_priors.myst.md
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Expand Up @@ -8,6 +8,9 @@ kernelspec:
display_name: Python [conda env:spatial_pymc_env]
language: python
name: conda-env-spatial_pymc_env-py
myst:
substitutions:
extra_dependencies: geopandas libpysal
---

+++ {"tags": []}
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6 changes: 4 additions & 2 deletions examples/case_studies/factor_analysis.ipynb
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Expand Up @@ -837,8 +837,10 @@
"pygments_lexer": "ipython3",
"version": "3.9.10"
},
"substitutions": {
"extra_dependencies": "seaborn xarray-einstats"
"myst": {
"substitutions": {
"extra_dependencies": "seaborn"
}
}
},
"nbformat": 4,
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5 changes: 3 additions & 2 deletions examples/case_studies/factor_analysis.myst.md
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Expand Up @@ -9,8 +9,9 @@ kernelspec:
display_name: Python 3 (ipykernel)
language: python
name: python3
substitutions:
extra_dependencies: seaborn xarray-einstats
myst:
substitutions:
extra_dependencies: seaborn
---

(factor_analysis)=
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4 changes: 0 additions & 4 deletions examples/case_studies/putting_workflow.ipynb
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Expand Up @@ -1667,10 +1667,6 @@
"pygments_lexer": "ipython3",
"version": "3.10.9"
},
"substitutions": {
"conda_dependencies": "!!xarray-einstats not available!!",
"pip_dependencies": "xarray-einstats"
},
"vscode": {
"interpreter": {
"hash": "087adf61916f8b9a562e3919cc7201fe0599d07c87f54bc57443476208d67f09"
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3 changes: 0 additions & 3 deletions examples/case_studies/putting_workflow.myst.md
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Expand Up @@ -8,9 +8,6 @@ kernelspec:
display_name: pymc_env
language: python
name: python3
substitutions:
conda_dependencies: '!!xarray-einstats not available!!'
pip_dependencies: xarray-einstats
---

(putting_workflow)=
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6 changes: 4 additions & 2 deletions examples/case_studies/reliability_and_calibrated_prediction.ipynb
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Expand Up @@ -8048,8 +8048,10 @@
"pygments_lexer": "ipython3",
"version": "3.10.8"
},
"substitutions": {
"extra_dependencies": "lifelines"
"myst": {
"substitutions": {
"extra_dependencies": "lifelines"
}
}
},
"nbformat": 4,
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5 changes: 3 additions & 2 deletions examples/case_studies/reliability_and_calibrated_prediction.myst.md
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Expand Up @@ -8,8 +8,9 @@ kernelspec:
display_name: Python 3 (ipykernel)
language: python
name: python3
substitutions:
extra_dependencies: lifelines
myst:
substitutions:
extra_dependencies: lifelines
---

(Reliability Statistics and Predictive Calibration)=
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6 changes: 4 additions & 2 deletions examples/case_studies/rugby_analytics.ipynb
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Expand Up @@ -2898,8 +2898,10 @@
"pygments_lexer": "ipython3",
"version": "3.9.10"
},
"substitutions": {
"extra_dependencies": "seaborn numba xarray-einstats"
"myst": {
"substitutions": {
"extra_dependencies": "seaborn numba"
}
}
},
"nbformat": 4,
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5 changes: 3 additions & 2 deletions examples/case_studies/rugby_analytics.myst.md
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Expand Up @@ -8,8 +8,9 @@ kernelspec:
display_name: Python 3 (ipykernel)
language: python
name: python3
substitutions:
extra_dependencies: seaborn numba xarray-einstats
myst:
substitutions:
extra_dependencies: seaborn numba
---

# A Hierarchical model for Rugby prediction
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6 changes: 4 additions & 2 deletions examples/case_studies/wrapping_jax_function.ipynb
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Expand Up @@ -1641,8 +1641,10 @@
"pygments_lexer": "ipython3",
"version": "3.10.2"
},
"substitutions": {
"extra_dependencies": "jax numpyro"
"myst": {
"substitutions": {
"extra_dependencies": "jax numpyro"
}
},
"toc": {
"base_numbering": 1,
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5 changes: 3 additions & 2 deletions examples/case_studies/wrapping_jax_function.myst.md
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Expand Up @@ -8,8 +8,9 @@ kernelspec:
display_name: pymc-examples
language: python
name: pymc-examples
substitutions:
extra_dependencies: jax numpyro
myst:
substitutions:
extra_dependencies: jax numpyro
---

(wrapping_jax_function)=
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3 changes: 3 additions & 0 deletions examples/causal_inference/interventional_distribution.myst.md
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Expand Up @@ -9,6 +9,9 @@ kernelspec:
display_name: pymc_env
language: python
name: pymc_env
myst:
substitutions:
extra_dependencies: daft pymc_experimental
---

+++ {"editable": true, "slideshow": {"slide_type": ""}, "tags": []}
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6 changes: 4 additions & 2 deletions examples/gaussian_processes/GP-MaunaLoa.ipynb
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Expand Up @@ -1710,8 +1710,10 @@
"pygments_lexer": "ipython3",
"version": "3.9.5"
},
"substitutions": {
"extra_dependencies": "bokeh"
"myst": {
"substitutions": {
"extra_dependencies": "bokeh"
}
}
},
"nbformat": 4,
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5 changes: 3 additions & 2 deletions examples/gaussian_processes/GP-MaunaLoa.myst.md
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Expand Up @@ -8,8 +8,9 @@ kernelspec:
display_name: Python 3
language: python
name: python3
substitutions:
extra_dependencies: bokeh
myst:
substitutions:
extra_dependencies: bokeh
---

(GP-MaunaLoa)=
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6 changes: 4 additions & 2 deletions examples/generalized_linear_models/GLM-robust-with-outlier-detection.ipynb
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Expand Up @@ -1895,8 +1895,10 @@
"pygments_lexer": "ipython3",
"version": "3.10.9"
},
"substitutions": {
"extra_dependencies": "seaborn"
"myst": {
"substitutions": {
"extra_dependencies": "seaborn"
}
},
"toc-autonumbering": false,
"toc-showcode": false,
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5 changes: 3 additions & 2 deletions examples/generalized_linear_models/GLM-robust-with-outlier-detection.myst.md
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Expand Up @@ -8,8 +8,9 @@ kernelspec:
display_name: pymc_env
language: python
name: python3
substitutions:
extra_dependencies: seaborn
myst:
substitutions:
extra_dependencies: seaborn
---

(GLM-robust-with-outlier-detection)=
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