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Clustered heatmap#5646

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Commits on Dec 5, 2013

• Initial commit of clustered heatmap

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  4759d31

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• Fixed bugs that arose while making an example. Funny how that happens!

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  d8eb771

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• Added citation of Chris DeBoever

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• Added some docstrings

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• Added some docstrings

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• Changed exceptions to AssertionErrors

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• Fixed relabeling of columns

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• Fixed some PEP8 and other formatting stuff

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• Changed default sequential colormap to YlGnBu and explained "divergent" better

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• Changed dictionary comprehension to explicit dict() call on generated (For Travis-CI)

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• fixed incomplete typo undoing

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  7634d20

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• Fixed yticklabel indexing so yticklabels could be just a list of strings and not necessarily indexable by a list of indices

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• Made AssertionError of label_cols and label_rows more descriptive

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• Removed extraneous print statements

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• Removed more extraneous print statements

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• Changed docstrings to reStructuredText and added linewidth+edgecolor specifications

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  8f03b1e

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• Fixed log scale vmin/vmax stuff and added some more parameters for user fiddling

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• Added width ratio finder for various colorbar locations (but otherwise other colorbar locations not implemented)

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• Changed clustering to operate on log10 of the data if the color_scale=log

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Commits on Dec 6, 2013

• Added acknowledgement to Michael Lovci

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• Added fastcluster as optional import for really large matrices

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• added fastcluster argument to heatmap function

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• Was clustering on log10(df) all the time?? fixed to only do so when color_scale='log'

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• added metric option for calculating distances

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  7caf10b

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• added metric option for calculating distances

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  87e989d

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• removed extraneous spaces

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• set default linkage method to average

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Commits on Dec 8, 2013

• changed any(df) to df.any()

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Commits on Dec 16, 2013

• Changed AssertionError's to ValueError's

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• Added docstring explaining get_width_ratios

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• Unified row and column linkage methods

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