CI/TYP: run stubtest

.pre-commit-config.yaml

@@ -85,32 +85,42 @@ repos:
 -   repo: local
     hooks:
     -   id: pyright
+        # note: assumes python env is setup and activated
         name: pyright
         entry: pyright
-        # note: assumes python env is setup and activated
         language: node
         pass_filenames: false
         types: [python]
         stages: [manual]
         additional_dependencies: &pyright_dependencies
         - [email protected]
     -   id: pyright_reportGeneralTypeIssues
+        # note: assumes python env is setup and activated
         name: pyright reportGeneralTypeIssues
         entry: pyright --skipunannotated -p pyright_reportGeneralTypeIssues.json
-        # note: assumes python env is setup and activated
         language: node
         pass_filenames: false
         types: [python]
         stages: [manual]
         additional_dependencies: *pyright_dependencies
     -   id: mypy
+        # note: assumes python env is setup and activated
         name: mypy
         entry: mypy
-        # note: assumes python env is setup and activated
         language: system
         pass_filenames: false
         types: [python]
         stages: [manual]
+    -   id: stubtest
+        # note: assumes python env is setup and activated
+        # note: requires pandas dev to be installed
+        name: mypy (stubtest)
+        entry: python
+        language: system
+        pass_filenames: false
+        types: [pyi]
+        args: [scripts/run_stubtest.py]
+        stages: [manual]
     -   id: flake8-rst
         name: flake8-rst
         description: Run flake8 on code snippets in docstrings or RST files

pandas/_libs/hashtable.pyi

@@ -39,72 +39,72 @@ class Int64Factorizer(Factorizer):
     ) -> npt.NDArray[np.intp]: ...
 
 class Int64Vector:
-    def __init__(self): ...
+    def __init__(self, *args): ...
     def __len__(self) -> int: ...
     def to_array(self) -> npt.NDArray[np.int64]: ...
 
 class Int32Vector:
-    def __init__(self): ...
+    def __init__(self, *args): ...
     def __len__(self) -> int: ...
     def to_array(self) -> npt.NDArray[np.int32]: ...
 
 class Int16Vector:
-    def __init__(self): ...
+    def __init__(self, *args): ...
     def __len__(self) -> int: ...
     def to_array(self) -> npt.NDArray[np.int16]: ...
 
 class Int8Vector:
-    def __init__(self): ...
+    def __init__(self, *args): ...
     def __len__(self) -> int: ...
     def to_array(self) -> npt.NDArray[np.int8]: ...
 
 class UInt64Vector:
-    def __init__(self): ...
+    def __init__(self, *args): ...
     def __len__(self) -> int: ...
     def to_array(self) -> npt.NDArray[np.uint64]: ...
 
 class UInt32Vector:
-    def __init__(self): ...
+    def __init__(self, *args): ...
     def __len__(self) -> int: ...
     def to_array(self) -> npt.NDArray[np.uint32]: ...
 
 class UInt16Vector:
-    def __init__(self): ...
+    def __init__(self, *args): ...
     def __len__(self) -> int: ...
     def to_array(self) -> npt.NDArray[np.uint16]: ...
 
 class UInt8Vector:
-    def __init__(self): ...
+    def __init__(self, *args): ...
     def __len__(self) -> int: ...
     def to_array(self) -> npt.NDArray[np.uint8]: ...
 
 class Float64Vector:
-    def __init__(self): ...
+    def __init__(self, *args): ...
     def __len__(self) -> int: ...
     def to_array(self) -> npt.NDArray[np.float64]: ...
 
 class Float32Vector:
-    def __init__(self): ...
+    def __init__(self, *args): ...
     def __len__(self) -> int: ...
     def to_array(self) -> npt.NDArray[np.float32]: ...
 
 class Complex128Vector:
-    def __init__(self): ...
+    def __init__(self, *args): ...
     def __len__(self) -> int: ...
     def to_array(self) -> npt.NDArray[np.complex128]: ...
 
 class Complex64Vector:
-    def __init__(self): ...
+    def __init__(self, *args): ...
     def __len__(self) -> int: ...
     def to_array(self) -> npt.NDArray[np.complex64]: ...
 
 class StringVector:
-    def __init__(self): ...
+    def __init__(self, *args): ...
     def __len__(self) -> int: ...
     def to_array(self) -> npt.NDArray[np.object_]: ...
 
 class ObjectVector:
-    def __init__(self): ...
+    def __init__(self, *args): ...
     def __len__(self) -> int: ...
     def to_array(self) -> npt.NDArray[np.object_]: ...
 

pandas/_libs/tslibs/timedeltas.pyi

@@ -85,7 +85,7 @@ class Timedelta(timedelta):
     def __new__(
         cls: type[_S],
         value=...,
-        unit: str = ...,
+        unit: str | None = ...,
         **kwargs: float | np.integer | np.floating,
     ) -> _S: ...
     # GH 46171

pandas/core/arrays/arrow/array.py

@@ -163,6 +163,7 @@ class ArrowExtensionArray(OpsMixin, ExtensionArray):
     """
 
     _data: pa.ChunkedArray
+    _dtype: ArrowDtype
 
     def __init__(self, values: pa.Array | pa.ChunkedArray) -> None:
         if pa_version_under1p01:

pandas/core/arrays/string_arrow.py

@@ -108,6 +108,10 @@ class ArrowStringArray(ArrowExtensionArray, BaseStringArray, ObjectStringArrayMi
     Length: 4, dtype: string
     """
 
+    # error: Incompatible types in assignment (expression has type "StringDtype",
+    # base class "ArrowExtensionArray" defined the type as "ArrowDtype")
+    _dtype: StringDtype  # type: ignore[assignment]
+
     def __init__(self, values) -> None:
         super().__init__(values)
         # TODO: Migrate to ArrowDtype instead

pandas/core/window/rolling.py

@@ -144,7 +144,7 @@ def __init__(
         self._win_type = win_type
         self.axis = obj._get_axis_number(axis) if axis is not None else None
         self.method = method
-        self._win_freq_i8 = None
+        self._win_freq_i8: int | None = None
         if self.on is None:
             if self.axis == 0:
                 self._on = self.obj.index
@@ -1838,15 +1838,13 @@ def _validate(self):
                     "compatible with a datetimelike index"
                 ) from err
             if isinstance(self._on, PeriodIndex):
-                # error: Incompatible types in assignment (expression has type "float",
-                # variable has type "None")
+                # error: Incompatible types in assignment (expression has type
+                # "float", variable has type "Optional[int]")
                 self._win_freq_i8 = freq.nanos / (  # type: ignore[assignment]
                     self._on.freq.nanos / self._on.freq.n
                 )
             else:
-                # error: Incompatible types in assignment (expression has type "int",
-                # variable has type "None")
-                self._win_freq_i8 = freq.nanos  # type: ignore[assignment]
+                self._win_freq_i8 = freq.nanos
 
             # min_periods must be an integer
             if self.min_periods is None:
@@ -2867,7 +2865,9 @@ def _get_window_indexer(self) -> GroupbyIndexer:
             window = self.window
         elif self._win_freq_i8 is not None:
             rolling_indexer = VariableWindowIndexer
-            window = self._win_freq_i8
+            # error: Incompatible types in assignment (expression has type
+            # "int", variable has type "BaseIndexer")
+            window = self._win_freq_i8  # type: ignore[assignment]
         else:
             rolling_indexer = FixedWindowIndexer
             window = self.window

scripts/run_stubtest.py

@@ -0,0 +1,85 @@
+import os
+from pathlib import Path
+import sys
+import tempfile
+import warnings
+
+from mypy import stubtest
+
+import pandas as pd
+
+# fail early if pandas is not installed
+if "dev" not in getattr(pd, "__version__", ""):
+    # fail on the CI, soft fail during local development
+    warnings.warn("You need to install the development version of pandas")
+    if pd.compat.is_ci_environment():
+        sys.exit(1)
+    else:
+        sys.exit(0)
+
+
+_ALLOWLIST = [  # should be empty
+    # TODO (child classes implement these methods)
+    "pandas._libs.hashtable.HashTable.__contains__",
+    "pandas._libs.hashtable.HashTable.__len__",
+    "pandas._libs.hashtable.HashTable.factorize",
+    "pandas._libs.hashtable.HashTable.get_item",
+    "pandas._libs.hashtable.HashTable.get_labels",
+    "pandas._libs.hashtable.HashTable.get_state",
+    "pandas._libs.hashtable.HashTable.lookup",
+    "pandas._libs.hashtable.HashTable.map_locations",
+    "pandas._libs.hashtable.HashTable.set_item",
+    "pandas._libs.hashtable.HashTable.sizeof",
+    "pandas._libs.hashtable.HashTable.unique",
+    # stubtest might be too sensitive
+    "pandas._libs.lib.NoDefault",
+    "pandas._libs.lib._NoDefault.no_default",
+    # internal type alias (should probably be private)
+    "pandas._libs.lib.ndarray_obj_2d",
+    # workaround for mypy (cache_readonly = property)
+    "pandas._libs.properties.cache_readonly.__get__",
+    "pandas._libs.properties.cache_readonly.deleter",
+    "pandas._libs.properties.cache_readonly.getter",
+    "pandas._libs.properties.cache_readonly.setter",
+    # TODO (child classes implement these methods)
+    "pandas._libs.sparse.SparseIndex.__init__",
+    "pandas._libs.sparse.SparseIndex.equals",
+    "pandas._libs.sparse.SparseIndex.indices",
+    "pandas._libs.sparse.SparseIndex.intersect",
+    "pandas._libs.sparse.SparseIndex.lookup",
+    "pandas._libs.sparse.SparseIndex.lookup_array",
+    "pandas._libs.sparse.SparseIndex.make_union",
+    "pandas._libs.sparse.SparseIndex.nbytes",
+    "pandas._libs.sparse.SparseIndex.ngaps",
+    "pandas._libs.sparse.SparseIndex.to_block_index",
+    "pandas._libs.sparse.SparseIndex.to_int_index",
+    # TODO (decorator changes argument names)
+    "pandas._libs.tslibs.offsets.BaseOffset._apply_array",
+    "pandas._libs.tslibs.offsets.BusinessHour.rollback",
+    "pandas._libs.tslibs.offsets.BusinessHour.rollforward ",
+    # type alias
+    "pandas._libs.tslibs.timedeltas.UnitChoices",
+]
+
+if __name__ == "__main__":
+    # find pyi files
+    root = Path.cwd()
+    pyi_modules = [
+        str(pyi.relative_to(root).with_suffix("")).replace(os.sep, ".")
+        for pyi in root.glob("pandas/**/*.pyi")
+    ]
+
+    # create allowlist
+    with tempfile.NamedTemporaryFile(mode="w+t") as allow:
+        allow.write("\n".join(_ALLOWLIST))
+        allow.flush()
+
+        args = pyi_modules + [
+            "--ignore-missing-stub",
+            "--concise",
+            "--mypy-config-file",
+            "pyproject.toml",
+            "--allowlist",
+            allow.name,
+        ]
+        sys.exit(stubtest.test_stubs(stubtest.parse_options(args)))