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DOC: Add/Update Pandas-Genomics in Ecosystem files #40710

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f3b10cd
Add/update pandas-genomics in ecosystem files
jrm5100 Mar 31, 2021
40d9de4
Update web ecosystem file
jrm5100 Mar 31, 2021
79aed42
Fix trailing whitespaces with precommit
jrm5100 Mar 31, 2021
3910856
clarify QC
jrm5100 Apr 1, 2021
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23 changes: 12 additions & 11 deletions doc/source/ecosystem.rst
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Expand Up @@ -475,7 +475,7 @@ arrays can be stored inside pandas' Series and DataFrame.
`Pandas-Genomics`_
~~~~~~~~~~~~~~~~~~

Pandas-Genomics provides extension types and extension arrays for working with genomics data
Pandas-Genomics provides extension types, extension arrays, and extension accessors for working with genomics data

`Pint-Pandas`_
~~~~~~~~~~~~~~
Expand All @@ -502,16 +502,17 @@ A directory of projects providing
:ref:`extension accessors <extending.register-accessors>`. This is for users to
discover new accessors and for library authors to coordinate on the namespace.

=============== ============ ==================================== ===============================================================
Library Accessor Classes Description
=============== ============ ==================================== ===============================================================
`cyberpandas`_ ``ip`` ``Series`` Provides common operations for working with IP addresses.
`pdvega`_ ``vgplot`` ``Series``, ``DataFrame`` Provides plotting functions from the Altair_ library.
`pandas_path`_ ``path`` ``Index``, ``Series`` Provides `pathlib.Path`_ functions for Series.
`pint-pandas`_ ``pint`` ``Series``, ``DataFrame`` Provides units support for numeric Series and DataFrames.
`composeml`_ ``slice`` ``DataFrame`` Provides a generator for enhanced data slicing.
`datatest`_ ``validate`` ``Series``, ``DataFrame``, ``Index`` Provides validation, differences, and acceptance managers.
=============== ============ ==================================== ===============================================================
================== ============ ==================================== ===============================================================================
Library Accessor Classes Description
================== ============ ==================================== ===============================================================================
`cyberpandas`_ ``ip`` ``Series`` Provides common operations for working with IP addresses.
`pdvega`_ ``vgplot`` ``Series``, ``DataFrame`` Provides plotting functions from the Altair_ library.
`pandas-genomics`_ ``genomics`` ``Series``, ``DataFrame`` Provides common operations for quality control and analysis of genomics data
`pandas_path`_ ``path`` ``Index``, ``Series`` Provides `pathlib.Path`_ functions for Series.
`pint-pandas`_ ``pint`` ``Series``, ``DataFrame`` Provides units support for numeric Series and DataFrames.
`composeml`_ ``slice`` ``DataFrame`` Provides a generator for enhanced data slicing.
`datatest`_ ``validate`` ``Series``, ``DataFrame``, ``Index`` Provides validation, differences, and acceptance managers.
================== ============ ==================================== ===============================================================================

.. _cyberpandas: https://cyberpandas.readthedocs.io/en/latest
.. _pdvega: https://altair-viz.github.io/pdvega/
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21 changes: 14 additions & 7 deletions web/pandas/community/ecosystem.md
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Expand Up @@ -360,6 +360,12 @@ Cyberpandas provides an extension type for storing arrays of IP
Addresses. These arrays can be stored inside pandas' Series and
DataFrame.

### [Pandas-Genomics](https://pandas-genomics.readthedocs.io/en/latest/)

Pandas-Genomics provides an extension type and extension array for working
with genomics data. It also includes `genomics` accessors for many useful properties
and methods related to QC and analysis of genomics data.

### [Pint-Pandas](https://github.com/hgrecco/pint-pandas)

Pint-Pandas provides an extension type for storing numeric arrays with units.
Expand All @@ -373,10 +379,11 @@ A directory of projects providing
`extension accessors <extending.register-accessors>`. This is for users to discover new accessors and for library
authors to coordinate on the namespace.

| Library | Accessor | Classes |
| --------------------------------------------------------------|----------|-----------------------|
| [cyberpandas](https://cyberpandas.readthedocs.io/en/latest) | `ip` | `Series` |
| [pdvega](https://altair-viz.github.io/pdvega/) | `vgplot` | `Series`, `DataFrame` |
| [pandas_path](https://github.com/drivendataorg/pandas-path/) | `path` | `Index`, `Series` |
| [pint-pandas](https://github.com/hgrecco/pint-pandas) | `pint` | `Series`, `DataFrame` |
| [composeml](https://github.com/FeatureLabs/compose) | `slice` | `DataFrame` |
| Library | Accessor | Classes |
| ---------------------------------------------------------------------|------------|-----------------------|
| [cyberpandas](https://cyberpandas.readthedocs.io/en/latest) | `ip` | `Series` |
| [pdvega](https://altair-viz.github.io/pdvega/) | `vgplot` | `Series`, `DataFrame` |
| [pandas-genomics](https://pandas-genomics.readthedocs.io/en/latest/) | `genomics` | `Series`, `DataFrame` |
| [pandas_path](https://github.com/drivendataorg/pandas-path/) | `path` | `Index`, `Series` |
| [pint-pandas](https://github.com/hgrecco/pint-pandas) | `pint` | `Series`, `DataFrame` |
| [composeml](https://github.com/FeatureLabs/compose) | `slice` | `DataFrame` |