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Backport PR #37433 on branch 1.1.x (REGR: fix groupby std() with nullable dtypes) #37444

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1 change: 1 addition & 0 deletions doc/source/whatsnew/v1.1.4.rst
Original file line number Diff line number Diff line change
Expand Up @@ -21,6 +21,7 @@ Fixed regressions
- Fixed regression in :meth:`Series.astype` converting ``None`` to ``"nan"`` when casting to string (:issue:`36904`)
- Fixed regression in :class:`RollingGroupby` causing a segmentation fault with Index of dtype object (:issue:`36727`)
- Fixed regression in :meth:`DataFrame.resample(...).apply(...)` raised ``AttributeError`` when input was a :class:`DataFrame` and only a :class:`Series` was evaluated (:issue:`36951`)
- Fixed regression in ``DataFrame.groupby(..).std()`` with nullable integer dtype (:issue:`37415`)
- Fixed regression in :class:`PeriodDtype` comparing both equal and unequal to its string representation (:issue:`37265`)
- Fixed regression where slicing :class:`DatetimeIndex` raised :exc:`AssertionError` on irregular time series with ``pd.NaT`` or on unsorted indices (:issue:`36953` and :issue:`35509`)
- Fixed regression in certain offsets (:meth:`pd.offsets.Day() <pandas.tseries.offsets.Day>` and below) no longer being hashable (:issue:`37267`)
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2 changes: 1 addition & 1 deletion pandas/core/groupby/groupby.py
Original file line number Diff line number Diff line change
Expand Up @@ -2489,9 +2489,9 @@ def _get_cythonized_result(
except TypeError as e:
error_msg = str(e)
continue
vals = vals.astype(cython_dtype, copy=False)
if needs_2d:
vals = vals.reshape((-1, 1))
vals = vals.astype(cython_dtype, copy=False)
func = partial(func, vals)

func = partial(func, labels)
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24 changes: 24 additions & 0 deletions pandas/tests/groupby/aggregate/test_cython.py
Original file line number Diff line number Diff line change
Expand Up @@ -277,3 +277,27 @@ def test_read_only_buffer_source_agg(agg):
expected = df.copy().groupby(["species"]).agg({"sepal_length": agg})

tm.assert_equal(result, expected)


@pytest.mark.parametrize(
"op_name",
["count", "sum", "std", "var", "sem", "mean", "median", "prod", "min", "max"],
)
def test_cython_agg_nullable_int(op_name):
# ensure that the cython-based aggregations don't fail for nullable dtype
# (eg https://github.com/pandas-dev/pandas/issues/37415)
df = DataFrame(
{
"A": ["A", "B"] * 5,
"B": pd.array([1, 2, 3, 4, 5, 6, 7, 8, 9, pd.NA], dtype="Int64"),
}
)
result = getattr(df.groupby("A")["B"], op_name)()
df2 = df.assign(B=df["B"].astype("float64"))
expected = getattr(df2.groupby("A")["B"], op_name)()

if op_name != "count":
# the result is not yet consistently using Int64/Float64 dtype,
# so for now just checking the values by casting to float
result = result.astype("float64")
tm.assert_series_equal(result, expected)