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Merged
merged 4 commits into from
Apr 16, 2020
Merged

Update pytables version #33580

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659ce2e
Bump pytables version to >= 3.4.3
rbenes Apr 16, 2020
326f8bc
Update readme
rbenes Apr 16, 2020
5aeccdd
Generate deps
rbenes Apr 16, 2020
a6566e4
Forgotten reference updated
rbenes Apr 16, 2020
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2 changes: 1 addition & 1 deletion ci/deps/azure-36-minimum_versions.yaml
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Expand Up @@ -21,7 +21,7 @@ dependencies:
- numexpr=2.6.2
- numpy=1.13.3
- openpyxl=2.5.7
- pytables=3.4.2
- pytables=3.4.3
- python-dateutil=2.7.3
- pytz=2017.2
- scipy=0.19.0
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4 changes: 2 additions & 2 deletions doc/source/getting_started/install.rst
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Expand Up @@ -262,7 +262,7 @@ BeautifulSoup4 4.6.0 HTML parser for read_html (see :ref
Jinja2 Conditional formatting with DataFrame.style
PyQt4 Clipboard I/O
PyQt5 Clipboard I/O
PyTables 3.4.2 HDF5-based reading / writing
PyTables 3.4.3 HDF5-based reading / writing
SQLAlchemy 1.1.4 SQL support for databases other than sqlite
SciPy 0.19.0 Miscellaneous statistical functions
XLsxWriter 0.9.8 Excel writing
Expand All @@ -279,7 +279,7 @@ psycopg2 PostgreSQL engine for sqlalchemy
pyarrow 0.12.0 Parquet, ORC (requires 0.13.0), and feather reading / writing
pymysql 0.7.11 MySQL engine for sqlalchemy
pyreadstat SPSS files (.sav) reading
pytables 3.4.2 HDF5 reading / writing
pytables 3.4.3 HDF5 reading / writing
pyxlsb 1.0.6 Reading for xlsb files
qtpy Clipboard I/O
s3fs 0.3.0 Amazon S3 access
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45 changes: 44 additions & 1 deletion doc/source/whatsnew/v1.1.0.rst
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Expand Up @@ -104,7 +104,7 @@ Other enhancements
Increased minimum versions for dependencies
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

Some minimum supported versions of dependencies were updated (:issue:`29766`, :issue:`29723`).
Some minimum supported versions of dependencies were updated (:issue:`29766`, :issue:`29723`, pytables >= 3.4.3).
If installed, we now require:

+-----------------+-----------------+----------+---------+
Expand All @@ -113,6 +113,49 @@ If installed, we now require:
| python-dateutil | 2.7.3 | X | |
+-----------------+-----------------+----------+---------+

For `optional libraries <https://dev.pandas.io/docs/install.html#dependencies>`_ the general recommendation is to use the latest version.
The following table lists the lowest version per library that is currently being tested throughout the development of pandas.
Optional libraries below the lowest tested version may still work, but are not considered supported.

+-----------------+-----------------+---------+
| Package | Minimum Version | Changed |
+=================+=================+=========+
| beautifulsoup4 | 4.6.0 | |
+-----------------+-----------------+---------+
| fastparquet | 0.3.2 | |
+-----------------+-----------------+---------+
| gcsfs | 0.2.2 | |
+-----------------+-----------------+---------+
| lxml | 3.8.0 | |
+-----------------+-----------------+---------+
| matplotlib | 2.2.2 | |
+-----------------+-----------------+---------+
| numba | 0.46.0 | |
+-----------------+-----------------+---------+
| openpyxl | 2.5.7 | |
+-----------------+-----------------+---------+
| pyarrow | 0.13.0 | |
+-----------------+-----------------+---------+
| pymysql | 0.7.1 | |
+-----------------+-----------------+---------+
| pytables | 3.4.2 | X |
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3.4.3?

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3.4.3?

Yes, you are right. I miss it during rebasing/conflict. Thanks. Now it is fixed a6566e4

+-----------------+-----------------+---------+
| s3fs | 0.3.0 | |
+-----------------+-----------------+---------+
| scipy | 0.19.0 | |
+-----------------+-----------------+---------+
| sqlalchemy | 1.1.4 | |
+-----------------+-----------------+---------+
| xarray | 0.8.2 | |
+-----------------+-----------------+---------+
| xlrd | 1.1.0 | |
+-----------------+-----------------+---------+
| xlsxwriter | 0.9.8 | |
+-----------------+-----------------+---------+
| xlwt | 1.2.0 | |
+-----------------+-----------------+---------+

See :ref:`install.dependencies` and :ref:`install.optional_dependencies` for more.

Development Changes
^^^^^^^^^^^^^^^^^^^
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2 changes: 1 addition & 1 deletion environment.yml
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Expand Up @@ -97,7 +97,7 @@ dependencies:
- python-snappy # required by pyarrow

- pyqt>=5.9.2 # pandas.read_clipboard
- pytables>=3.4.2 # pandas.read_hdf, DataFrame.to_hdf
- pytables>=3.4.3 # pandas.read_hdf, DataFrame.to_hdf
- s3fs # pandas.read_csv... when using 's3://...' path
- sqlalchemy # pandas.read_sql, DataFrame.to_sql
- xarray # DataFrame.to_xarray
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4 changes: 2 additions & 2 deletions pandas/compat/_optional.py
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Expand Up @@ -17,13 +17,13 @@
"openpyxl": "2.5.7",
"pandas_gbq": "0.8.0",
"pyarrow": "0.13.0",
"pytables": "3.4.2",
"pytables": "3.4.3",
"pytest": "5.0.1",
"pyxlsb": "1.0.6",
"s3fs": "0.3.0",
"scipy": "0.19.0",
"sqlalchemy": "1.1.4",
"tables": "3.4.2",
"tables": "3.4.3",
"tabulate": "0.8.3",
"xarray": "0.8.2",
"xlrd": "1.1.0",
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2 changes: 1 addition & 1 deletion requirements-dev.txt
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Expand Up @@ -64,7 +64,7 @@ fastparquet>=0.3.2
pyarrow>=0.13.1
python-snappy
pyqt5>=5.9.2
tables>=3.4.2
tables>=3.4.3
s3fs
sqlalchemy
xarray
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