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BUG: Summing empty DataFrame can convert to incompatible type #40669

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orbisvicis opened this issue Mar 28, 2021 · 3 comments · Fixed by #52788
Closed

BUG: Summing empty DataFrame can convert to incompatible type #40669

orbisvicis opened this issue Mar 28, 2021 · 3 comments · Fixed by #52788
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Bug Dtype Conversions Unexpected or buggy dtype conversions Reduction Operations sum, mean, min, max, etc.

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@orbisvicis
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orbisvicis commented Mar 28, 2021

In DataFrame._reduce are there reasons not to have try/except clauses around this conversion?

pandas/pandas/core/frame.py

Lines 9581 to 9584 in 029907c

if axis == 0 and len(self) == 0 and name in ["sum", "prod"]:
# Even if we are object dtype, follow numpy and return
# float64, see test_apply_funcs_over_empty
out = out.astype(np.float64)

Like you have here:

pandas/pandas/core/frame.py

Lines 9609 to 9613 in 029907c

try:
result = result.astype(np.float64)
except (ValueError, TypeError):
# try to coerce to the original dtypes item by item if we can
pass

Because then you have issues like this, which are very common in groupby (I mean empty DataFrames are common):

pd.DataFrame(columns=["Duration"], dtype="timedelta64[ns]").sum(skipna=False)
---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
<ipython-input-2442-dd5151a2feed> in <module>
----> 1 pd.DataFrame(columns=["Duration"], dtype="timedelta64[ns]").sum(skipna=False)

.../lib/python3.8/site-packages/pandas/core/generic.py in sum(self, axis, skipna, level, numeric_only, min_count, **kwargs)
  11069             **kwargs,
  11070         ):
> 11071             return NDFrame.sum(
  11072                 self, axis, skipna, level, numeric_only, min_count, **kwargs
  11073             )

.../lib/python3.8/site-packages/pandas/core/generic.py in sum(self, axis, skipna, level, numeric_only, min_count, **kwargs)
  10789         **kwargs,
  10790     ):
> 10791         return self._min_count_stat_function(
  10792             "sum", nanops.nansum, axis, skipna, level, numeric_only, min_count, **kwargs
  10793         )

.../lib/python3.8/site-packages/pandas/core/generic.py in _min_count_stat_function(self, name, func, axis, skipna, level, numeric_only, min_count, **kwargs)
  10771                 name, axis=axis, level=level, skipna=skipna, min_count=min_count
  10772             )
> 10773         return self._reduce(
  10774             func,
  10775             name=name,

.../lib/python3.8/site-packages/pandas/core/frame.py in _reduce(self, op, name, axis, skipna, numeric_only, filter_type, **kwds)
   8855                 # Even if we are object dtype, follow numpy and return
   8856                 #  float64, see test_apply_funcs_over_empty
-> 8857                 out = out.astype(np.float64)
   8858             return out
   8859

.../lib/python3.8/site-packages/pandas/core/generic.py in astype(self, dtype, copy, errors)
   5875         else:
   5876             # else, only a single dtype is given
-> 5877             new_data = self._mgr.astype(dtype=dtype, copy=copy, errors=errors)
   5878             return self._constructor(new_data).__finalize__(self, method="astype")
   5879

.../lib/python3.8/site-packages/pandas/core/internals/managers.py in astype(self, dtype, copy, errors)
    629         self, dtype, copy: bool = False, errors: str = "raise"
    630     ) -> "BlockManager":
--> 631         return self.apply("astype", dtype=dtype, copy=copy, errors=errors)
    632
    633     def convert(

.../lib/python3.8/site-packages/pandas/core/internals/managers.py in apply(self, f, align_keys, ignore_failures, **kwargs)
    425                     applied = b.apply(f, **kwargs)
    426                 else:
--> 427                     applied = getattr(b, f)(**kwargs)
    428             except (TypeError, NotImplementedError):
    429                 if not ignore_failures:

.../lib/python3.8/site-packages/pandas/core/internals/blocks.py in astype(self, dtype, copy, errors)
    671             vals1d = values.ravel()
    672             try:
--> 673                 values = astype_nansafe(vals1d, dtype, copy=True)
    674             except (ValueError, TypeError):
    675                 # e.g. astype_nansafe can fail on object-dtype of strings

.../lib/python3.8/site-packages/pandas/core/dtypes/cast.py in astype_nansafe(arr, dtype, copy, skipna)
   1061             return arr.astype(TD64NS_DTYPE, copy=copy)
   1062
-> 1063         raise TypeError(f"cannot astype a timedelta from [{arr.dtype}] to [{dtype}]")
   1064
   1065     elif np.issubdtype(arr.dtype, np.floating) and np.issubdtype(dtype, np.integer):

TypeError: cannot astype a timedelta from [timedelta64[ns]] to [float64]

And I don't think one should depend on the the undocumented behavior of a negative min_count to bypass that coercion while guaranteeing the same output as if min_count were 0.

if (numeric_only is not None or axis == 0) and min_count == 0:

Especially with code like:

def _maybe_null_out(

This stackoverflow question, Sum Empty DataFrame without Converting to Incompatible Type goes into more detail.

@orbisvicis orbisvicis changed the title Summing empty DataFrame can convert to incompatible type BUG: Summing empty DataFrame can convert to incompatible type Mar 28, 2021
@orbisvicis
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I have no idea what happened to the default issue template, but someone will have to add the appropriate labels.

@rhshadrach rhshadrach added Bug Dtype Conversions Unexpected or buggy dtype conversions Numeric Operations Arithmetic, Comparison, and Logical operations labels Mar 30, 2021
@rhshadrach
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Thanks for the report! Instead of try-except, I wonder if we should only be doing the cast to float when the type is object (so what the comment says).

@jbrockmendel jbrockmendel added Reduction Operations sum, mean, min, max, etc. and removed Numeric Operations Arithmetic, Comparison, and Logical operations labels Jan 8, 2022
@rhshadrach
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Also, I think the dtype in this result should be an integer:

df = pd.DataFrame(columns=["a", "b"], dtype=int)
print(df.sum())
# a    0.0
# b    0.0
# dtype: float64

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