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I hooked up gdb and tracked down the issue to inside of the lib.pyx which assumes that series's are of length > 0. I made a PR that should fix it, though we'll see how the tests chooch.
closespandas-dev#19368
Author: Matthew Kirk <[email protected]>
Closespandas-dev#19438 from hexgnu/segfault_memory_usage and squashes the following commits:
f9433d8 [Matthew Kirk] Use shared docstring and get rid of if condition
4ead141 [Matthew Kirk] Move whatsnew doc to Sparse
ae9f74d [Matthew Kirk] Revert base.py
cdd4141 [Matthew Kirk] Fix linting error
93a0c3d [Matthew Kirk] Merge remote-tracking branch 'upstream/master' into segfault_memory_usage
207bc74 [Matthew Kirk] Define memory_usage on SparseArray
21ae147 [Matthew Kirk] FIX: revert change to lib.pyx
3f52a44 [Matthew Kirk] Ah ha I think I got it
5e59e9c [Matthew Kirk] Use range over 0 <= for loops
e251587 [Matthew Kirk] Fix failing test with indexing
27df317 [Matthew Kirk] Merge remote-tracking branch 'upstream/master' into segfault_memory_usage
7fdd03e [Matthew Kirk] Take out comment and use product
6bd6ddd [Matthew Kirk] BUG: don't assume series is length > 0
Code Sample, a copy-pastable example if possible
Problem description
Executing the
memory_usage(deep=True)
method on a sparse series crashes Python. (Withdeep=False
the method works as expected.)Expected Output
Output of
pd.show_versions()
INSTALLED VERSIONS
commit: None
python: 3.6.3.final.0
python-bits: 64
OS: Windows
OS-release: 10
machine: AMD64
processor: Intel64 Family 6 Model 60 Stepping 3, GenuineIntel
byteorder: little
LC_ALL: None
LANG: None
LOCALE: None.None
pandas: 0.22.0
pytest: 3.2.1
pip: 9.0.1
setuptools: 36.5.0.post20170921
Cython: 0.26.1
numpy: 1.13.3
scipy: 0.19.1
pyarrow: None
xarray: None
IPython: 6.1.0
sphinx: 1.6.3
patsy: 0.4.1
dateutil: 2.6.1
pytz: 2017.2
blosc: None
bottleneck: 1.2.1
tables: 3.4.2
numexpr: 2.6.2
feather: None
matplotlib: 2.1.0
openpyxl: 2.4.8
xlrd: 1.1.0
xlwt: 1.3.0
xlsxwriter: 1.0.2
lxml: 4.1.0
bs4: 4.6.0
html5lib: 0.999999999
sqlalchemy: 1.1.13
pymysql: None
psycopg2: None
jinja2: 2.9.6
s3fs: None
fastparquet: None
pandas_gbq: None
pandas_datareader: None
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