Skip to content

Issue iterating with pd.read_sas #13654

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closed
andersbogsnes opened this issue Jul 14, 2016 · 2 comments · Fixed by #14743 · May be fixed by spillz/pandas#1
Closed

Issue iterating with pd.read_sas #13654

andersbogsnes opened this issue Jul 14, 2016 · 2 comments · Fixed by #14743 · May be fixed by spillz/pandas#1
Labels
Bug IO SAS SAS: read_sas
Milestone

Comments

@andersbogsnes
Copy link

andersbogsnes commented Jul 14, 2016

Code Sample, a copy-pastable example if possible

import pandas as pd

f = pd.read_sas('test.sas7bdat', iterator=True)
for chunk in f:
    print(f)

---------------------------------------------------------------------------
AbstractMethodError                       Traceback (most recent call last)
<ipython-input-3-bedf2769bffe> in <module>()
----> 1 for chunk in f:
      2     print(chunk)

C:\Anaconda3\lib\site-packages\pandas\io\common.py in __next__(self)
     99 
    100     def __next__(self):
--> 101         raise AbstractMethodError(self)
    102 
    103 if not compat.PY3:

AbstractMethodError: This method must be defined in the concrete class of SAS7BDATReader

Expected Output

Print of each chunk

I'm no expert, but it seems as if the SAS7BDAT class inherits from BaseIterator but does not provide its own __next__ method

output of pd.show_versions()

INSTALLED VERSIONS

commit: None
python: 3.5.1.final.0
python-bits: 64
OS: Windows
OS-release: 7
machine: AMD64
processor: Intel64 Family 6 Model 60 Stepping 3, GenuineIntel
byteorder: little
LC_ALL: None
LANG: None

pandas: 0.18.1
nose: 1.3.7
pip: 8.1.2
setuptools: 20.3
Cython: 0.23.4
numpy: 1.10.4
scipy: 0.17.0
statsmodels: 0.6.1
xarray: None
IPython: 4.1.2
sphinx: 1.3.1
patsy: 0.4.1
dateutil: 2.5.1
pytz: 2016.2
blosc: None
bottleneck: 1.0.0
tables: 3.2.2
numexpr: 2.5.2
matplotlib: 1.5.1
openpyxl: 2.3.2
xlrd: 0.9.4
xlwt: 1.0.0
xlsxwriter: 0.8.4
lxml: 3.6.0
bs4: 4.4.1
html5lib: None
httplib2: None
apiclient: None
sqlalchemy: 1.0.12
pymysql: None
psycopg2: None
jinja2: 2.8
boto: 2.39.0
pandas_datareader: None

@jorisvandenbossche jorisvandenbossche modified the milestones: 0.19.0, Next Major Release Jul 14, 2016
@jorisvandenbossche
Copy link
Member

@andersbogsnes That seems like a correct observation! Do you want to make a PR for this? Shouldn't be too difficult, you can see how it is done for the xport reader: https://github.com/pydata/pandas/blob/master/pandas/io/sas/sas_xport.py#L354

@andersbogsnes
Copy link
Author

Sure, I'll give it a go, seems doable!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Bug IO SAS SAS: read_sas
Projects
None yet
3 participants