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v0.0.6 to main#247

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dajmcdon merged 67 commits intomaincmu-delphi/epipredict:mainfrom

v0.0.6cmu-delphi/epipredict:v0.0.6Copy head branch name to clipboard

Oct 19, 2023

Commits

Commits on Sep 14, 2023

• start CDC baseline layer

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Commits on Sep 22, 2023

• upgrade enframer

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Commits on Sep 23, 2023

• functions, remains to check validity

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Commits on Sep 24, 2023

• correct symmetrization, enhance documentation of the "ahead" param in `flatline_forecaster()`.

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• better defaults, cli, pred is scalar in propagate_samples

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• redocument

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• run styler

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• redocument after styling

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Commits on Sep 25, 2023

• example plotting with ggplot2 handled correctly

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• finish quantile pivotting helpers, redocument

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• fix extra check note.

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• run styler

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Commits on Sep 29, 2023

• add lifecycle, deprecate pivot_quantiles.

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Commits on Oct 1, 2023

• renaming in dist_quantiles

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• much renaming to quantile_values

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• redocument

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• tests pass

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• all checks pass, rename complete

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Commits on Oct 2, 2023

• quantile_values -> quantile_levels

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• redocument, run styler

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Commits on Oct 4, 2023

• working cdc baseline

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• add cdc baseline to pkgdown

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• local checks pass

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• CI: triggering the CI via commit is not ideal

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• Fix incomplete `symmetrize` + document it

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• `document()`

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• Fix death rate 7dav -> weekly sum conversion in example

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  93fac1a

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• Copyediting, roxygen link styling, formatting

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• finish quantile pivotting helpers, redocument

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  965155d

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• fix extra check note.

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  1cf5dff

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• add lifecycle, deprecate pivot_quantiles.

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• "Logical" -> "Scalar logical" as appropriate to match rest of docs

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Commits on Oct 5, 2023

• add formatter to the correct branch

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• Merge branch '240-quantile-pivot' of https://github.com/cmu-delphi/epipredict into 240-quantile-pivot

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• Merge branch 'cdc-baseline' of https://github.com/cmu-delphi/epipredict into cdc-baseline

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• Speed up cdc baseline: `quantile(...., names = FALSE)`

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• CI: trying to change in a particular branch too

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• CI: needs to be on the target branch as well

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• CI: also needs to be on the branch

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• formatter works

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• local checks pass

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  b5fe624

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• Merge branch 'cdc-baseline' of https://github.com/cmu-delphi/epipredict into cdc-baseline

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  bdbd3ee

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• address @nmdefries comments

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• pass local checks

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  8d1e47d

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• Merge pull request #241 from cmu-delphi/240-quantile-pivot

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• merge 241 / v0.0.6

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• complete the merge, local checks pass

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Commits on Oct 6, 2023

• Merge pull request #243 from cmu-delphi/242-quantile-renaming

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• Merge pull request #245 from cmu-delphi/cdc-baseline

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• bump version, pass local checks

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• bump news

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Commits on Oct 18, 2023

• merge main, redocument

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• run styler

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• redocument

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• remove point predictions. closes 249

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• closes #251

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• correct default args

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• redocument

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Commits on Oct 19, 2023

• Merge pull request #254 from cmu-delphi/v0.0.6-cleanup

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• add ... for baseline arg list

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• check empty dots

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• adjust authors

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• better error printing

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• file unused

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• redocument

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• rerun styler

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• fix styler action

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