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Epidata v4.1#954

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melange396 merged 58 commits intodevcmu-delphi/delphi-epidata:devfrom

v4-schema-revisions-release-prepcmu-delphi/delphi-epidata:v4-schema-revisions-release-prepCopy head branch name to clipboard

Sep 22, 2022

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Commits on Mar 4, 2022

• Update workflow to build container images from branch

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Commits on Mar 7, 2022

• Merge pull request #868 from cmu-delphi/build-container-images-on-branch

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Commits on May 3, 2022

• wip removals

  melange396

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• old schema removal

  melange396

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• new schema addition, plus source and test changes to go with it

  melange396

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• administrativa (requirement version pinning & ignore filespec)

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Commits on May 11, 2022

• fixed functionality and testing for delete_batch feature

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Commits on May 26, 2022

• Remove remaining wip pieces in tests

  dshemetov

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• Put long name test back

  dshemetov

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Commits on May 31, 2022

• schema refinement, dbjobs speed increase, and added migration routine

  melange396

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Commits on Jun 2, 2022

• fix to re-do changes the last commit undid from the commit before it... and also restore a method that got deleted??

  melange396

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• removed run_dbjobs_old() and cleaned up table name references

  melange396

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• removed process_status column of load table, moved dbjobs() call to end of regular acquisition method, removed helper to run dbjobs as a standalone process

  melange396

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Commits on Jun 14, 2022

• adding method to fix autoincrement counter

  melange396

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• Update integrations/server/test_covidcast_endpoints.py

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• Update src/acquisition/covidcast/database.py

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  krivard

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• Update src/server/endpoints/covidcast.py

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  krivard

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Commits on Jun 15, 2022

• changes from comments on PR

  melange396

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• Apply suggestions from code review & discussion

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• Switch to CREATE TABLE SELECT for signal_latest

  krivard

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• Remove dev setup from prod v4 DDL

  krivard

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• Specify schema for each DDL file

  krivard

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• Merge pull request #903 from cmu-delphi/v4-schema-revisions-release-prep-prep

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Commits on Jun 21, 2022

• proper cli arguments incl a flag to resume processing (by id)

  melange396

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Commits on Aug 17, 2022

• removed bad index hint, added permuted indexes

  melange396

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Commits on Aug 18, 2022

• Merge branch 'dev' into v4-schema-revisions-release-prep

  krivard

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• changed dbjobs print() calls to proper logging & removed legacy_id column

  melange396

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• changes to simplify conflict resolution in https://github.com/cmu-delphi/delphi-epidata/pull/922 :

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• whoops, missed adding the changes from a test file to previous commit

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• proper index names for signal_latest

  melange396

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• Merge branch 'v4-schema-revisions-release-prep' into v4-srrpp-migrations

  krivard

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Commits on Aug 19, 2022

• Merge pull request #922 from cmu-delphi/v4-srrpp-migrations

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Commits on Aug 26, 2022

• incorporation of test improvements from parallel branch (#959)

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Commits on Aug 29, 2022

• renamed v4 db objects: load, latest, and history tables, and their id columns (#963)

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  melange396

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  krivard

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Commits on Aug 30, 2022

• cli option for specifying # of metadata worker threads

  melange396

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• added flag to Makefile for new percona db image (and some whitespace fixes)

  melange396

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• converted JOINs in VIEWs to 'USING' instead of 'ON'

  melange396

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• added ANALYZE TABLE to the end of acquisition runs (and some whitespace fixes)

  melange396

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• help string clarification

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  krivard

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• en-structure logging statement

  krivard

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• Merge pull request #964 from cmu-delphi/metadata_threads_and_etc

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• Fix mocked tests in test_csv_to_database.py

  dshemetov

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Commits on Aug 31, 2022

• halt acquisition when unexpected data found in load table

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Commits on Sep 1, 2022

• Merge pull request #967 from cmu-delphi/db_load_state_exception

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• Merge branch 'v4-schema-revisions-release-prep' into ds/remove-wip-tests

  melange396

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• Merge pull request #917 from cmu-delphi/ds/remove-wip-tests

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Commits on Sep 6, 2022

• Build an image from this branch

  korlaxxalrok

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• Update to latest Flask and SQLAlchemy

  korlaxxalrok

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• Update werkzeug

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• Use Row instead of RowProxy

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Commits on Sep 7, 2022

• fixes build for bumped versions of flask & etc.

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Commits on Sep 9, 2022

• make some sqlalchemy config options explicit (and not dependent on external specification) because they fundamentally change behaviors

  melange396

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• remove reference to this branch from ci.yaml, in anticipation of merge and deletion of this branch

  melange396

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• Merge pull request #973 from cmu-delphi/v4-schema-revisions-release-prep-flaskalchemy

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• Revert "TEST - Build and image with new Flask and SQLAlchemy" (#974)

  melange396

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• make some sqlalchemy config options explicit (and not dependent on external specification) because they fundamentally change behaviors

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Commits on Sep 21, 2022

• mysqlclient version bump to most recent

  melange396

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• Revert "Revert "TEST - Build and image with new Flask and SQLAlchemy" (#974)"

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