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Merged
merged 10 commits into from
Nov 6, 2020
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Merged

Add Makefiles with convenience functions to each indicator #443

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adf6810
Add makefile
chinandrew Nov 5, 2020
b3f66ea
Merge branch 'main' into makefile
chinandrew Nov 5, 2020
82b5663
Add makefile to all dirs
chinandrew Nov 5, 2020
a536f7e
Remove from SCA
chinandrew Nov 5, 2020
f3d8a85
add makefile for delphi utils
chinandrew Nov 5, 2020
d2299de
Update _delphi_utils_python/Makefile
chinandrew Nov 6, 2020
b1668d4
Update _delphi_utils_python/Makefile
chinandrew Nov 6, 2020
8a27446
Update newlines, python version, and use grep
chinandrew Nov 6, 2020
818d760
Merge branch 'makefile' of github.com:cmu-delphi/covidcast-indicators…
chinandrew Nov 6, 2020
bebf07e
Remove params file
chinandrew Nov 6, 2020
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22 changes: 22 additions & 0 deletions _delphi_utils_python/Makefile
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Original file line number Diff line number Diff line change
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.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env
23 changes: 23 additions & 0 deletions _template_python/Makefile
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.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e ../_delphi_utils_python ;\
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env
23 changes: 23 additions & 0 deletions cdc_covidnet/Makefile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e ../_delphi_utils_python ;\
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env
23 changes: 23 additions & 0 deletions changehc/Makefile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e ../_delphi_utils_python ;\
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env
23 changes: 23 additions & 0 deletions claims_hosp/Makefile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e ../_delphi_utils_python ;\
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env
23 changes: 23 additions & 0 deletions combo_cases_and_deaths/Makefile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e ../_delphi_utils_python ;\
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env
23 changes: 23 additions & 0 deletions google_health/Makefile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e ../_delphi_utils_python ;\
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env
23 changes: 23 additions & 0 deletions google_symptoms/Makefile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e ../_delphi_utils_python ;\
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env
23 changes: 23 additions & 0 deletions jhu/Makefile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e ../_delphi_utils_python ;\
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env
23 changes: 23 additions & 0 deletions nchs_mortality/Makefile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e ../_delphi_utils_python ;\
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env
23 changes: 23 additions & 0 deletions quidel/Makefile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e ../_delphi_utils_python ;\
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env
23 changes: 23 additions & 0 deletions quidel_covidtest/Makefile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e ../_delphi_utils_python ;\
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env
23 changes: 23 additions & 0 deletions safegraph/Makefile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e ../_delphi_utils_python ;\
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env
23 changes: 23 additions & 0 deletions safegraph_patterns/Makefile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e ../_delphi_utils_python ;\
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env
23 changes: 23 additions & 0 deletions usafacts/Makefile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,23 @@
.PHONY = venv, lint, test, clean

dir = $(shell find ./delphi_* -name __init__.py | sed 's/\/__init__.py//g;s/\.\///g')

venv:
python3 -m venv env

install: venv
. env/bin/activate; \
pip install wheel ; \
pip install -e ../_delphi_utils_python ;\
pip install -e .

lint:
. env/bin/activate; \
pylint $(dir)

test:
. env/bin/activate ;\
(cd tests && ../env/bin/pytest --cov=$(dir) --cov-report=term-missing)

clean:
rm -r env