UBC-DSCI · trevorcampbell · Jan 7, 2023 · Dec 22, 2022 · Dec 22, 2022 · Jan 4, 2023
diff --git a/Dockerfile b/Dockerfile
@@ -18,6 +18,7 @@ RUN mamba install --quiet --yes \
         'numpy' \
         'jinja2' \
         'altair_data_server' \
+        'altair_saver' \
         'click' \
         'ibis-framework' \
         'ghp-import' \

diff --git a/build_html.sh b/build_html.sh
@@ -1,2 +1,2 @@
 chmod -R o+w source/
-docker run --rm -v $(pwd):/home/jovyan ubcdsci/py-intro-to-ds:202212191809333bdc71 /bin/bash -c "jupyter-book build source"
+docker run --rm -v $(pwd):/home/jovyan ubcdsci/py-intro-to-ds:20230104230634037f38 /bin/bash -c "jupyter-book build source"
diff --git a/requirements.txt b/requirements.txt
diff --git a/source/_config.yml b/source/_config.yml
@@ -1,11 +1,7 @@
-#######################################################################################
-# Config file for EOSC211 jupyter book
-#######################################################################################
 # Book settings
-
-title: DSCΙ 100
+title: "Data Science: A First Introduction (Python Edition)"
 author: UBC
-copyright: "2021" # Copyright year to be placed in the footer
+copyright: "2022" # Copyright year to be placed in the footer
 logo: "" # A path to the book logo
 # Patterns to skip when building the book. Can be glob-style (e.g. "*skip.ipynb")
 exclude_patterns: [_build, Thumbs.db, .DS_Store, "*.ipynb_checkpoints"]
@@ -15,10 +11,10 @@ only_build_toc_files: true
 #######################################################################################
 # Execution settings
 execute:
-  execute_notebooks: "cache" # Whether to execute notebooks at build time. Must be one of ("auto", "force", "cache", "off")
+  execute_notebooks: "auto" # Whether to execute notebooks at build time. Must be one of ("auto", "force", "cache", "off")
   cache: "" # A path to the jupyter cache that will be used to store execution artifacts. Defaults to `_build/.jupyter_cache/`
   # exclude_patterns: [] # A list of patterns to *skip* in execution (e.g. a notebook that takes a really long time)
-  timeout: 30 # The maximum time (in seconds) each notebook cell is allowed to run.
+  timeout: 90 # The maximum time (in seconds) each notebook cell is allowed to run.
   run_in_temp:
     false # If `True`, then a temporary directory will be created and used as the command working directory (cwd),
     # otherwise the notebook's parent directory will be the cwd.
@@ -65,19 +61,15 @@ latex:
   latex_engine: pdflatex # one of 'pdflatex', 'xelatex' (recommended for unicode), 'luatex', 'platex', 'uplatex'
   use_jupyterbook_latex: true # use sphinx-jupyterbook-latex for pdf builds as default
 
-
 #######################################################################################
-
 # Launch button settings
 launch_buttons:
   binderhub_url: ""
 
-
-
 repository:
-  url: https://github.com/phaustin/eosc211_students # The URL to your book's repository
-  path_to_book: "" # A path to your book's folder, relative to the repository root.
-  branch: e211_live_main # Which branch of the repository should be used when creating links
+  url: https://github.com/UBC-DSCI/introduction-to-datascience-python # The URL to your book's repository
+  path_to_book: "source" # A path to your book's folder, relative to the repository root.
+  branch: production # Which branch of the repository should be used when creating links
 
 #######################################################################################
 # Advanced and power-user settings

diff --git a/source/_toc.yml b/source/_toc.yml
@@ -1,15 +1,18 @@
 format: jb-book
 root: index.md
-options:
-  numbered: true
 parts:
-- caption: First draft
+- caption: Front Matter
   chapters:
     - file: preface-text.md
-    - file: foreword-text.md
+    #- file: foreword.md
     - file: acknowledgements.md
+    - file: acknowledgements-python.md
     - file: authors.md
-    - file: setup.md
+    - file: editors.md
+    #- file: setup.md
+- caption: Chapters
+  numbered: 3
+  chapters:
     - file: intro.md
     - file: reading.md
     - file: wrangling.md
@@ -20,5 +23,7 @@ parts:
     - file: regression2.md
     - file: clustering.md
     - file: inference.md
-    - file: references.md
+- caption: Appendix
+  chapters:
     - file: appendixA.md
+    #- file: references.md
diff --git a/source/acknowledgements-python.md b/source/acknowledgements-python.md
@@ -0,0 +1,25 @@
+---
+jupytext:
+  cell_metadata_filter: -all
+  formats: py:percent,md:myst,ipynb
+  text_representation:
+    extension: .md
+    format_name: myst
+    format_version: 0.13
+    jupytext_version: 1.13.8
+kernelspec:
+  display_name: Python 3 (ipykernel)
+  language: python
+  name: python3
+---
+
+# Acknowledgments for the Python Edition
+
+We'd like to thank everyone that has contributed to the development of 
+[*Data Science: A First Introduction (Python Edition)*](https://ubc-dsci.github.io/introduction-to-datascience-python/).
+This is an open source Python translation of the original [*Data Science: A First Introduction*](https://datasciencebook.ca);
+the original focused on the R programming language. Both of these books are 
+used to teach DSCI 100, a new introductory data science course 
+at the University of British Columbia (UBC).
+
+We will finalize this acknowledgements section after the book is complete!
diff --git a/source/acknowledgements.md b/source/acknowledgements.md
@@ -13,7 +13,7 @@ kernelspec:
   name: python3
 ---
 
-# Acknowledgments -- TBD
+# Acknowledgments
 
 We'd like to thank everyone that has contributed to the development of 
 [*Data Science: A First Introduction*](https://datasciencebook.ca).

diff --git a/source/appendixA.md b/source/appendixA.md
@@ -13,9 +13,7 @@ kernelspec:
   name: python3
 ---
 
-# Appendix
-
-# Downloading files from JupyterHub {#appendixA}
+# Downloading files from JupyterHub 
 
 This section will help you
 save your work from a JupyterHub web-based platform to your own computer. 

diff --git a/source/authors.md b/source/authors.md
@@ -13,7 +13,7 @@ kernelspec:
   name: python3
 ---
 
-# About the authors -- TBD
+# About the authors
 
 **Tiffany Timbers** is an Assistant Professor of Teaching in the Department of
 Statistics and Co-Director for the Master of Data Science program (Vancouver

diff --git a/source/editors.md b/source/editors.md
@@ -0,0 +1,51 @@
+---
+jupytext:
+  cell_metadata_filter: -all
+  formats: py:percent,md:myst,ipynb
+  text_representation:
+    extension: .md
+    format_name: myst
+    format_version: 0.13
+    jupytext_version: 1.13.8
+kernelspec:
+  display_name: Python 3 (ipykernel)
+  language: python
+  name: python3
+---
+
+# About the editors of the Python Edition
+
+**Trevor Campbell** is an Assistant Professor in the Department of Statistics at
+the University of British Columbia. His research focuses on automated, scalable
+Bayesian inference algorithms, Bayesian nonparametrics, streaming data, and
+Bayesian theory. He was previously a postdoctoral associate advised by Tamara
+Broderick in the Computer Science and Artificial Intelligence Laboratory
+(CSAIL) and Institute for Data, Systems, and Society (IDSS) at MIT, a Ph.D.
+candidate under Jonathan How in the Laboratory for Information and Decision
+Systems (LIDS) at MIT, and before that he was in the Engineering Science
+program at the University of Toronto.
+
++++
+
+**Lindsey Heagy** is an Assistant Professor in the Department of Earth, Ocean, and Atmospheric 
+Sciences and director of the Geophysical Inversion Facility at the University of British Columbia. 
+Her research combines computational methods in numerical simulations, inversions, and machine 
+learning to answer questions about the subsurface of the Earth. Primary applications include 
+mineral exploration, carbon sequestration, groundwater and environmental studies. She 
+completed her BSc at the University of Alberta, her PhD at the University of British Columbia, 
+and held a Postdoctoral research position at the University of California Berkeley prior to 
+starting her current position at UBC. 
+
++++
+
+**Joel Ostblom** is an Assistant Professor of Teaching in the Department of
+Statistics at the University of British Columbia. 
+During his PhD, Joel developed a passion for data science and reproducibility
+through the development of quantitative image analysis pipelines for studying
+stem cell and developmental biology. He has since co-created or lead the
+development of several courses and workshops at the University of Toronto and
+is now an assistant professor of teaching in the statistics department at the
+University of British Columbia. Joel cares deeply about spreading data literacy
+and excitement over programmatic data analysis, which is reflected in his
+contributions to open source projects and data science learning resources. You
+can read more about Joel on his [personal page](https://joelostblom.com/).
diff --git a/source/img/altair_syntax.png b/source/img/altair_syntax.png
diff --git a/source/img/code-figures.pptx b/source/img/code-figures.pptx
diff --git a/source/img/completion_menu.png b/source/img/completion_menu.png
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