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code_checks.sh
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#!/bin/bash
#
# Run checks related to code quality.
#
# This script is intended for both the CI and to check locally that code standards are
# respected. We run doctests here (currently some files only), and we
# validate formatting error in docstrings.
#
# Usage:
# $ ./ci/code_checks.sh # run all checks
# $ ./ci/code_checks.sh code # checks on imported code
# $ ./ci/code_checks.sh doctests # run doctests
# $ ./ci/code_checks.sh docstrings # validate docstring errors
# $ ./ci/code_checks.sh single-docs # check single-page docs build warning-free
# $ ./ci/code_checks.sh notebooks # check execution of documentation notebooks
set -uo pipefail
if [[ -v 1 ]]; then
CHECK=$1
else
# script will fail if it uses an unset variable (i.e. $1 is not provided)
CHECK=""
fi
[[ -z "$CHECK" || "$CHECK" == "code" || "$CHECK" == "doctests" || "$CHECK" == "docstrings" || "$CHECK" == "single-docs" || "$CHECK" == "notebooks" ]] || \
{ echo "Unknown command $1. Usage: $0 [code|doctests|docstrings|single-docs|notebooks]"; exit 9999; }
BASE_DIR="$(dirname $0)/.."
RET=0
### CODE ###
if [[ -z "$CHECK" || "$CHECK" == "code" ]]; then
MSG='Check import. No warnings, and blocklist some optional dependencies' ; echo $MSG
python -W error -c "
import sys
import pandas
blocklist = {'bs4', 'gcsfs', 'html5lib', 'http', 'ipython', 'jinja2', 'hypothesis',
'lxml', 'matplotlib', 'openpyxl', 'py', 'pytest', 's3fs', 'scipy',
'tables', 'urllib.request', 'xlrd', 'xlsxwriter'}
# GH#28227 for some of these check for top-level modules, while others are
# more specific (e.g. urllib.request)
import_mods = set(m.split('.')[0] for m in sys.modules) | set(sys.modules)
mods = blocklist & import_mods
if mods:
sys.stderr.write('err: pandas should not import: {}\n'.format(', '.join(mods)))
sys.exit(len(mods))
"
RET=$(($RET + $?)) ; echo $MSG "DONE"
fi
### DOCTESTS ###
if [[ -z "$CHECK" || "$CHECK" == "doctests" ]]; then
MSG='Python and Cython Doctests' ; echo $MSG
python -c 'import pandas as pd; pd.test(run_doctests=True)'
RET=$(($RET + $?)) ; echo $MSG "DONE"
fi
### DOCSTRINGS ###
if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
MSG='Validate docstrings (EX01, EX04, GL01, GL02, GL03, GL04, GL05, GL06, GL07, GL09, GL10, PR03, PR04, PR05, PR06, PR08, PR09, PR10, RT01, RT02, RT04, RT05, SA02, SA03, SA04, SS01, SS02, SS03, SS04, SS05, SS06)' ; echo $MSG
$BASE_DIR/scripts/validate_docstrings.py --format=actions --errors=EX01,EX04,GL01,GL02,GL03,GL04,GL05,GL06,GL07,GL09,GL10,PR03,PR04,PR05,PR06,PR08,PR09,PR10,RT01,RT02,RT04,RT05,SA02,SA03,SA04,SS01,SS02,SS03,SS04,SS05,SS06
RET=$(($RET + $?)) ; echo $MSG "DONE"
MSG='Partially validate docstrings (EX03)' ; echo $MSG
$BASE_DIR/scripts/validate_docstrings.py --format=actions --errors=EX03 --ignore_functions \
pandas.Series.plot.line \
pandas.Series.to_sql \
pandas.errors.SettingWithCopyWarning \
pandas.errors.SpecificationError \
pandas.errors.UndefinedVariableError \
pandas.read_json \
pandas.DataFrame.to_sql \
RET=$(($RET + $?)) ; echo $MSG "DONE"
MSG='Partially validate docstrings (PR02)' ; echo $MSG
$BASE_DIR/scripts/validate_docstrings.py --format=actions --errors=PR02 --ignore_functions \
pandas.io.formats.style.Styler.to_excel\
pandas.CategoricalIndex.rename_categories\
pandas.CategoricalIndex.reorder_categories\
pandas.CategoricalIndex.add_categories\
pandas.CategoricalIndex.remove_categories\
pandas.CategoricalIndex.set_categories\
pandas.IntervalIndex.set_closed\
pandas.IntervalIndex.contains\
pandas.IntervalIndex.overlaps\
pandas.IntervalIndex.to_tuples\
pandas.DatetimeIndex.round\
pandas.DatetimeIndex.floor\
pandas.DatetimeIndex.ceil\
pandas.DatetimeIndex.month_name\
pandas.DatetimeIndex.day_name\
pandas.DatetimeIndex.to_period\
pandas.DatetimeIndex.std\
pandas.TimedeltaIndex.round\
pandas.TimedeltaIndex.floor\
pandas.TimedeltaIndex.ceil\
pandas.PeriodIndex\
pandas.PeriodIndex.strftime\
pandas.Series.clip\
pandas.Series.rename_axis\
pandas.Series.interpolate\
pandas.Series.dt.to_period\
pandas.Series.dt.tz_localize\
pandas.Series.dt.tz_convert\
pandas.Series.dt.strftime\
pandas.Series.dt.round\
pandas.Series.dt.floor\
pandas.Series.dt.ceil\
pandas.Series.dt.month_name\
pandas.Series.dt.day_name\
pandas.Series.str.count\
pandas.Series.str.wrap\
pandas.Series.cat.rename_categories\
pandas.Series.cat.reorder_categories\
pandas.Series.cat.add_categories\
pandas.Series.cat.remove_categories\
pandas.Series.cat.set_categories\
pandas.Series.plot\
pandas.Series.plot.bar\
pandas.Series.plot.barh\
pandas.Series.plot.line\
pandas.Series.plot.pie\
pandas.DataFrame.clip\
pandas.DataFrame.interpolate\
pandas.DataFrame.plot\
pandas.DataFrame.plot.bar\
pandas.DataFrame.plot.barh\
pandas.DataFrame.plot.line\
pandas.DataFrame.plot.pie\
pandas.tseries.offsets.DateOffset\
pandas.tseries.offsets.BusinessDay\
pandas.tseries.offsets.BDay\
pandas.tseries.offsets.BusinessHour\
pandas.tseries.offsets.CustomBusinessDay\
pandas.tseries.offsets.CDay\
pandas.tseries.offsets.CustomBusinessHour\
pandas.tseries.offsets.MonthEnd\
pandas.tseries.offsets.MonthBegin\
pandas.tseries.offsets.BusinessMonthEnd\
pandas.tseries.offsets.BMonthEnd\
pandas.tseries.offsets.BusinessMonthBegin\
pandas.tseries.offsets.BMonthBegin\
pandas.tseries.offsets.CustomBusinessMonthEnd\
pandas.tseries.offsets.CBMonthEnd\
pandas.tseries.offsets.CustomBusinessMonthBegin\
pandas.tseries.offsets.CBMonthBegin\
pandas.tseries.offsets.SemiMonthEnd\
pandas.tseries.offsets.SemiMonthBegin\
pandas.tseries.offsets.Week\
pandas.tseries.offsets.WeekOfMonth\
pandas.tseries.offsets.LastWeekOfMonth\
pandas.tseries.offsets.BQuarterEnd\
pandas.tseries.offsets.BQuarterBegin\
pandas.tseries.offsets.QuarterEnd\
pandas.tseries.offsets.QuarterBegin\
pandas.tseries.offsets.BYearEnd\
pandas.tseries.offsets.BYearBegin\
pandas.tseries.offsets.YearEnd\
pandas.tseries.offsets.YearBegin\
pandas.tseries.offsets.FY5253\
pandas.tseries.offsets.FY5253Quarter\
pandas.tseries.offsets.Easter\
pandas.tseries.offsets.Day\
pandas.tseries.offsets.Hour\
pandas.tseries.offsets.Minute\
pandas.tseries.offsets.Second\
pandas.tseries.offsets.Milli\
pandas.tseries.offsets.Micro\
pandas.tseries.offsets.Nano\
pandas.describe_option\
pandas.reset_option\
pandas.get_option\
pandas.set_option\
pandas.Timestamp.max\
pandas.Timestamp.min\
pandas.Timestamp.resolution\
pandas.Timedelta.max\
pandas.Timedelta.min\
pandas.Timedelta.resolution\
pandas.Interval\
pandas.Grouper\
pandas.core.groupby.SeriesGroupBy.apply\
pandas.core.groupby.DataFrameGroupBy.apply\
pandas.core.groupby.SeriesGroupBy.transform\
pandas.core.groupby.DataFrameGroupBy.transform\
pandas.core.groupby.DataFrameGroupBy.nth\
pandas.core.groupby.DataFrameGroupBy.rolling\
pandas.core.groupby.SeriesGroupBy.idxmax\
pandas.core.groupby.SeriesGroupBy.idxmin\
pandas.core.groupby.SeriesGroupBy.nth\
pandas.core.groupby.SeriesGroupBy.rolling\
pandas.core.groupby.DataFrameGroupBy.hist\
pandas.core.groupby.DataFrameGroupBy.plot\
pandas.core.groupby.SeriesGroupBy.plot\
pandas.read_hdf\
pandas.HDFStore.append\
pandas.core.window.rolling.Rolling.quantile\
pandas.core.window.expanding.Expanding.quantile\
pandas.core.resample.Resampler.interpolate\
pandas.api.extensions.ExtensionArray.argsort # There should be no backslash in the final line, please keep this comment in the last ignored function
RET=$(($RET + $?)) ; echo $MSG "DONE"
fi
### DOCUMENTATION NOTEBOOKS ###
if [[ -z "$CHECK" || "$CHECK" == "notebooks" ]]; then
MSG='Notebooks' ; echo $MSG
jupyter nbconvert --execute $(find doc/source -name '*.ipynb') --to notebook
RET=$(($RET + $?)) ; echo $MSG "DONE"
fi
### SINGLE-PAGE DOCS ###
if [[ -z "$CHECK" || "$CHECK" == "single-docs" ]]; then
python doc/make.py --warnings-are-errors --no-browser --single pandas.Series.value_counts
python doc/make.py --warnings-are-errors --no-browser --single pandas.Series.str.split
fi
exit $RET