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simonjayhawkinssimonjayhawkins
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Merge remote-tracking branch 'upstream/master' into bisect
2 parents f62ef8c + 80217cf commit e49d515

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634 files changed

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‎.github/workflows/ci.yml

+11-15
Original file line numberDiff line numberDiff line change
@@ -141,6 +141,9 @@ jobs:
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data_manager:
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name: Test experimental data manager
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runs-on: ubuntu-latest
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strategy:
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matrix:
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pattern: ["not slow and not network and not clipboard", "slow"]
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steps:
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- name: Checkout
@@ -150,20 +153,13 @@ jobs:
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uses: ./.github/actions/setup
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- name: Run tests
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env:
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PANDAS_DATA_MANAGER: array
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PATTERN: ${{ matrix.pattern }}
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PYTEST_WORKERS: "auto"
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run: |
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source activate pandas-dev
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pytest pandas/tests/frame/methods --array-manager
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pytest pandas/tests/frame/test_reductions.py --array-manager
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pytest pandas/tests/reductions/ --array-manager
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pytest pandas/tests/generic/test_generic.py --array-manager
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pytest pandas/tests/arithmetic/ --array-manager
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pytest pandas/tests/groupby/aggregate/ --array-manager
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pytest pandas/tests/reshape/merge --array-manager
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# indexing subset (temporary since other tests don't pass yet)
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pytest pandas/tests/frame/indexing/test_indexing.py::TestDataFrameIndexing::test_setitem_boolean --array-manager
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pytest pandas/tests/frame/indexing/test_where.py --array-manager
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pytest pandas/tests/frame/indexing/test_setitem.py::TestDataFrameSetItem::test_setitem_multi_index --array-manager
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pytest pandas/tests/frame/indexing/test_setitem.py::TestDataFrameSetItem::test_setitem_listlike_indexer_duplicate_columns --array-manager
168-
pytest pandas/tests/indexing/multiindex/test_setitem.py::TestMultiIndexSetItem::test_astype_assignment_with_dups --array-manager
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pytest pandas/tests/indexing/multiindex/test_setitem.py::TestMultiIndexSetItem::test_frame_setitem_multi_column --array-manager
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ci/run_tests.sh
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- name: Print skipped tests
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run: python ci/print_skipped.py

‎.github/workflows/database.yml

+9-87
Original file line numberDiff line numberDiff line change
@@ -12,17 +12,19 @@ env:
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PYTEST_WORKERS: "auto"
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PANDAS_CI: 1
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PATTERN: ((not slow and not network and not clipboard) or (single and db))
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COVERAGE: true
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jobs:
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Linux_py37_locale:
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Linux_py37_IO:
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runs-on: ubuntu-latest
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defaults:
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run:
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shell: bash -l {0}
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23-
env:
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ENV_FILE: ci/deps/actions-37-locale.yaml
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LOCALE_OVERRIDE: zh_CN.UTF-8
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strategy:
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matrix:
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ENV_FILE: [ci/deps/actions-37-db-min.yaml, ci/deps/actions-37-db.yaml]
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fail-fast: false
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services:
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mysql:
@@ -63,99 +65,20 @@ jobs:
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with:
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path: ~/conda_pkgs_dir
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key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
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hashFiles('${{ env.ENV_FILE }}') }}
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hashFiles('${{ matrix.ENV_FILE }}') }}
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- uses: conda-incubator/setup-miniconda@v2
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with:
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activate-environment: pandas-dev
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channel-priority: strict
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environment-file: ${{ env.ENV_FILE }}
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environment-file: ${{ matrix.ENV_FILE }}
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use-only-tar-bz2: true
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- name: Build Pandas
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uses: ./.github/actions/build_pandas
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- name: Test
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run: ci/run_tests.sh
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if: always()
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- name: Build Version
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run: pushd /tmp && python -c "import pandas; pandas.show_versions();" && popd
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- name: Publish test results
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uses: actions/upload-artifact@master
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with:
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name: Test results
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path: test-data.xml
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if: failure()
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- name: Print skipped tests
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run: python ci/print_skipped.py
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Linux_py37_cov:
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runs-on: ubuntu-latest
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defaults:
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run:
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shell: bash -l {0}
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env:
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ENV_FILE: ci/deps/actions-37-cov.yaml
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PANDAS_TESTING_MODE: deprecate
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COVERAGE: true
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services:
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mysql:
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image: mysql
109-
env:
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MYSQL_ALLOW_EMPTY_PASSWORD: yes
111-
MYSQL_DATABASE: pandas
112-
options: >-
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--health-cmd "mysqladmin ping"
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--health-interval 10s
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--health-timeout 5s
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--health-retries 5
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ports:
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- 3306:3306
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postgres:
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image: postgres
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env:
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POSTGRES_USER: postgres
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POSTGRES_PASSWORD: postgres
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POSTGRES_DB: pandas
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options: >-
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--health-cmd pg_isready
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--health-interval 10s
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--health-timeout 5s
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--health-retries 5
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ports:
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- 5432:5432
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134-
steps:
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- name: Checkout
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uses: actions/checkout@v1
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- name: Cache conda
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uses: actions/cache@v1
140-
env:
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CACHE_NUMBER: 0
142-
with:
143-
path: ~/conda_pkgs_dir
144-
key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
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hashFiles('${{ env.ENV_FILE }}') }}
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- uses: conda-incubator/setup-miniconda@v2
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with:
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activate-environment: pandas-dev
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channel-priority: strict
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environment-file: ${{ env.ENV_FILE }}
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use-only-tar-bz2: true
153-
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- name: Build Pandas
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uses: ./.github/actions/build_pandas
156-
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- name: Test
158-
run: ci/run_tests.sh
81+
run: pytest -m "${{ env.PATTERN }}" -n 2 --dist=loadfile -s --strict-markers --durations=30 --junitxml=test-data.xml -s --cov=pandas --cov-report=xml pandas/tests/io
15982
if: always()
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- name: Build Version
@@ -174,7 +97,6 @@ jobs:
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- name: Upload coverage to Codecov
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uses: codecov/codecov-action@v1
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with:
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files: /tmp/test_coverage.xml
178100
flags: unittests
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name: codecov-pandas
180102
fail_ci_if_error: true

‎.github/workflows/posix.yml

+93
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,93 @@
1+
name: Posix
2+
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on:
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push:
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branches: [master]
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pull_request:
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branches:
8+
- master
9+
- 1.2.x
10+
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env:
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PYTEST_WORKERS: "auto"
13+
PANDAS_CI: 1
14+
15+
jobs:
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pytest:
17+
runs-on: ubuntu-latest
18+
defaults:
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run:
20+
shell: bash -l {0}
21+
strategy:
22+
matrix:
23+
settings: [
24+
[actions-37-minimum_versions.yaml, "not slow and not network and not clipboard", "", "", "", "", ""],
25+
[actions-37.yaml, "not slow and not network and not clipboard", "", "", "", "", ""],
26+
[actions-37-locale_slow.yaml, "slow", "language-pack-it xsel", "it_IT.utf8", "it_IT.utf8", "", ""],
27+
[actions-37-slow.yaml, "slow", "", "", "", "", ""],
28+
[actions-38.yaml, "not slow and not network and not clipboard", "", "", "", "", ""],
29+
[actions-38-slow.yaml, "slow", "", "", "", "", ""],
30+
[actions-38-locale.yaml, "not slow and not network", "language-pack-zh-hans xsel", "zh_CN.utf8", "zh_CN.utf8", "", ""],
31+
[actions-38-numpydev.yaml, "not slow and not network", "xsel", "", "", "deprecate", "-W error"],
32+
[actions-39.yaml, "not slow and not network and not clipboard", "", "", "", "", ""]
33+
]
34+
fail-fast: false
35+
env:
36+
COVERAGE: true
37+
ENV_FILE: ci/deps/${{ matrix.settings[0] }}
38+
PATTERN: ${{ matrix.settings[1] }}
39+
EXTRA_APT: ${{ matrix.settings[2] }}
40+
LANG: ${{ matrix.settings[3] }}
41+
LC_ALL: ${{ matrix.settings[4] }}
42+
PANDAS_TESTING_MODE: ${{ matrix.settings[5] }}
43+
TEST_ARGS: ${{ matrix.settings[6] }}
44+
45+
steps:
46+
- name: Checkout
47+
uses: actions/checkout@v1
48+
49+
- name: Cache conda
50+
uses: actions/cache@v1
51+
env:
52+
CACHE_NUMBER: 0
53+
with:
54+
path: ~/conda_pkgs_dir
55+
key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{
56+
hashFiles('${{ env.ENV_FILE }}') }}
57+
58+
- name: Extra installs
59+
run: sudo apt-get update && sudo apt-get install -y libc6-dev-i386 ${{ env.EXTRA_APT }}
60+
61+
- uses: conda-incubator/setup-miniconda@v2
62+
with:
63+
activate-environment: pandas-dev
64+
channel-priority: flexible
65+
environment-file: ${{ env.ENV_FILE }}
66+
use-only-tar-bz2: true
67+
68+
- name: Build Pandas
69+
uses: ./.github/actions/build_pandas
70+
71+
- name: Test
72+
run: ci/run_tests.sh
73+
if: always()
74+
75+
- name: Build Version
76+
run: pushd /tmp && python -c "import pandas; pandas.show_versions();" && popd
77+
78+
- name: Publish test results
79+
uses: actions/upload-artifact@master
80+
with:
81+
name: Test results
82+
path: test-data.xml
83+
if: failure()
84+
85+
- name: Print skipped tests
86+
run: python ci/print_skipped.py
87+
88+
- name: Upload coverage to Codecov
89+
uses: codecov/codecov-action@v1
90+
with:
91+
flags: unittests
92+
name: codecov-pandas
93+
fail_ci_if_error: false

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