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Installation Guide (Linux)

Thomas Wiecki edited this page Jun 10, 2022 · 32 revisions

PyMC Installation for Linux

We recommend using Anaconda (or Miniforge) to install Python on MacOS, which allows for packages to be installed using its conda utility.

conda create -c conda-forge -n pymc_env "pymc>=4.0"
conda activate pymc_env

If you like, replace the name pymc_env with whatever environment name you prefer.

JAX sampling

If you wish to enable sampling using the JAX backend via NumPyro (experimental), the following should also be installed:

pip install jax jaxlib numpyro

Similarly, to use BlackJAX for sampling it should be installed via pip:

pip install blackjax

PyMC3 Installation

If you are looking for PyMC3, it can be installed from Conda Forge (conda-forge):

conda create -c conda-forge -n pymc3_env pymc3 theano-pymc mkl mkl-service
conda activate pymc3_env

Note that you must specifically request theano-pymc or you will get an obsolete version of PyMC3 that works with the now-abandoned theano library. We encourage you to test this with the --dry-run flag to ensure you get up-to-date versions.

While discouraged due to reports of installation problems you could try to install PyMC3 and its dependencies via PyPI using pip:

pip install pymc3