Extend API documents (#3506)

rpgoldman · ColCarroll · commit e7d28f44ebd2 · 2019-06-05T21:47:03.000-04:00
* Add `MultiTrace` and graphviz output to API docs. * Update notebook directory. Remove deleted jupyter notebook from table of contents file (thanks, @ColCarroll!)
diff --git a/docs/source/api.rst b/docs/source/api.rst
@@ -19,4 +19,5 @@ API Reference
    api/math
    api/data
    api/model
+   api/model_graph
    api/shape_utils
diff --git a/docs/source/api/backends.rst b/docs/source/api/backends.rst
@@ -7,6 +7,13 @@ Backends
 .. automodule:: pymc3.backends
    :members:
 
+basic Backends (including MultiTrace)
+^^^^^^^^
+
+.. automodule:: pymc3.backends.base
+  :members:
+
+
 ndarray
 ^^^^^^^
 
@@ -38,3 +45,4 @@ tracetab
 
 .. automodule:: pymc3.backends.tracetab
    :members:
+
diff --git a/docs/source/api/model_graph.rst b/docs/source/api/model_graph.rst
@@ -0,0 +1,7 @@
+Graphing Models
+-------------
+
+.. currentmodule:: pymc3.model_graph
+.. automodule:: pymc3.model_graph
+   :members:
+
diff --git a/docs/source/notebooks/table_of_contents_examples.js b/docs/source/notebooks/table_of_contents_examples.js
@@ -29,7 +29,6 @@ Gallery.contents = {
     "GP-MeansAndCovs": "Gaussian Processes",
     "GP-SparseApprox": "Gaussian Processes",
     "GP-TProcess": "Gaussian Processes",
-    "GP-slice-sampling": "Gaussian Processes",
     "GP-smoothing": "Gaussian Processes",
     "gaussian_process": "Gaussian Processes",
     "dependent_density_regression": "Mixture Models",
