Merge branch 'pymc-devs:main' into test-metric

Author: ccaprani

.github/PULL_REQUEST_TEMPLATE.md

@@ -13,8 +13,14 @@
 ## Major / Breaking Changes
 - ...
 
-## Bugfixes / New features
+## New features
 - ...
 
-## Docs / Maintenance
+## Bugfixes
+- ...
+
+## Documentation
+- ...
+
+## Maintenance
 - ...

.github/release.yml

@@ -9,16 +9,15 @@ changelog:
     - title: Major Changes 🛠
       labels:
         - major
-    - title: New Features & Bugfixes 🎉
+    - title: New Features 🎉
       labels:
-        - defects
         - enhancements
-        - feature-request
-    - title: Docs & Maintenance 🔧
+        - feature request
+    - title: Bugfixes 🪲
       labels:
+        - bug
+    - title: Documentation 📖
         - docs
-        - installation
-        - maintenance
-        - pre-commit
-        - tests
+    - title: Maintenance 🔧
+      labels:
         - "*"

.pre-commit-config.yaml

@@ -35,6 +35,14 @@ repos:
       args: [--rcfile=.pylintrc]
       files: ^pymc/
       exclude: (?x)(pymc/_version.py)
+- repo: https://github.com/PyCQA/pydocstyle
+  rev: 6.1.1
+  hooks:
+    - id: pydocstyle
+      args:
+      - --ignore=D100,D101,D102,D103,D104,D105,D107,D200,D202,D203,D204,D205,D209,D212,D213,D301,D400,D401,D403,D413,D415,D417
+      files: ^pymc/
+      exclude: ^pymc/tests/
 - repo: https://github.com/MarcoGorelli/madforhooks
   rev: 0.3.0
   hooks:

README.rst

@@ -102,17 +102,17 @@ General purpose
 ---------------
 
 - `Bambi <https://github.com/bambinos/bambi>`__: BAyesian Model-Building Interface (BAMBI) in Python.
+- `calibr8 <https://calibr8.readthedocs.io>`__: A toolbox for constructing detailed observation models to be used as likelihoods in PyMC.
+- `gumbi <https://github.com/JohnGoertz/Gumbi>`__: A high-level interface for building GP models.
 - `SunODE <https://github.com/aseyboldt/sunode>`__: Fast ODE solver, much faster than the one that comes with PyMC.
 - `pymc-learn <https://github.com/pymc-learn/pymc-learn>`__: Custom PyMC models built on top of pymc3_models/scikit-learn API
-- `fenics-pymc3 <https://github.com/IvanYashchuk/fenics-pymc3>`__: Differentiable interface to FEniCS, a library for solving partial differential equations.
 
 Domain specific
 ---------------
 
 - `Exoplanet <https://github.com/dfm/exoplanet>`__: a toolkit for modeling of transit and/or radial velocity observations of exoplanets and other astronomical time series.
-- `NiPyMC <https://github.com/PsychoinformaticsLab/nipymc>`__: Bayesian mixed-effects modeling of fMRI data in Python.
 - `beat <https://github.com/hvasbath/beat>`__: Bayesian Earthquake Analysis Tool.
-- `cell2location <https://github.com/BayraktarLab/cell2location>`__: Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics.
+- `CausalPy <https://github.com/pymc-labs/CausalPy>`__: A package focussing on causal inference in quasi-experimental settings.
 
 Please contact us if your software is not listed here.
 

pymc/blocking.py

@@ -79,7 +79,7 @@ def rmap(
         """Map 1D concatenated array to a dictionary of variables in their original spaces.
 
         Parameters
-        ==========
+        ----------
         array
             The array to map.
         start_point