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doctest setup with solved merge conflicts
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docs/source/conf.py

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# Copyright 2022 The PyMC Developers
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#
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# Licensed under the Apache License, Version 2.0 (the "License");
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# you may not use this file except in compliance with the License.
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# You may obtain a copy of the License at
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#
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# http://www.apache.org/licenses/LICENSE-2.0
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#
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# Unless required by applicable law or agreed to in writing, software
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# distributed under the License is distributed on an "AS IS" BASIS,
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# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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# See the License for the specific language governing permissions and
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# limitations under the License.
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#
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# Configuration file for the Sphinx documentation builder.
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#
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# This file does only contain a selection of the most common options. For a
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# full list see the documentation:
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# http://www.sphinx-doc.org/en/master/config
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# -- Path setup --------------------------------------------------------------
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# If extensions (or modules to document with autodoc) are in another directory,
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# add these directories to sys.path here. If the directory is relative to the
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# documentation root, use os.path.abspath to make it absolute, like shown here.
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#
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import os
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import sys
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import pymc_experimental # isort:skip
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sys.path.insert(0, os.path.abspath("../"))
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# -- Project information -----------------------------------------------------
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project = "pymc_experimental"
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copyright = "2022, pymc-devs"
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author = "pymc-devs"
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# The short X.Y version
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version = pymc_experimental.__version__
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# The full version, including alpha/beta/rc tags
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release = version
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# -- General configuration ---------------------------------------------------
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# If your documentation needs a minimal Sphinx version, state it here.
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#
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# needs_sphinx = '1.0'
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# Add any Sphinx extension module names here, as strings. They can be
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# extensions coming with Sphinx (named 'sphinx.ext.*') or your custom
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# ones.
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extensions = [
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"sphinx.ext.autodoc",
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"sphinx.ext.doctest",
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"sphinx.ext.autosummary",
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"sphinx.ext.viewcode",
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"sphinx.ext.napoleon",
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"sphinx.ext.mathjax",
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"nbsphinx",
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"matplotlib.sphinxext.plot_directive",
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]
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nbsphinx_execute = "never"
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# Add any paths that contain templates here, relative to this directory.
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templates_path = ["_templates"]
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# The suffix(es) of source filenames.
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# You can specify multiple suffix as a list of string:
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#
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# source_suffix = ['.rst', '.md']
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source_suffix = ".rst"
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# The master toctree document.
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master_doc = "index"
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# The language for content autogenerated by Sphinx. Refer to documentation
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# for a list of supported languages.
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#
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# This is also used if you do content translation via gettext catalogs.
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# Usually you set "language" from the command line for these cases.
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# language = None
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# List of patterns, relative to source directory, that match files and
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# directories to ignore when looking for source files.
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# This pattern also affects html_static_path and html_extra_path.
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exclude_patterns = ["_build", "Thumbs.db", ".DS_Store", "**.ipynb_checkpoints"]
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# The name of the Pygments (syntax highlighting) style to use.
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pygments_style = "sphinx"
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# -- Options for HTML output -------------------------------------------------
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# The theme to use for HTML and HTML Help pages. See the documentation for
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# a list of builtin themes.
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#
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html_theme = "pymc_sphinx_theme"
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# Theme options are theme-specific and customize the look and feel of a theme
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# further. For a list of options available for each theme, see the
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# documentation.
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# https://pydata-sphinx-theme.readthedocs.io/en/latest/user_guide/configuring.html#remove-the-sidebar-from-some-pages
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html_theme_options = {
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"collapse_navigation": True,
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"show_toc_level": 2,
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"navigation_depth": 4,
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"search_bar_text": "Search the docs...",
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"use_search_override": False,
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"logo": {"text": project},
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}
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html_context = {
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"github_user": "pymc-devs",
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"github_repo": "pymc-experimental",
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"github_version": "main",
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"doc_path": "docs",
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"default_mode": "light",
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}
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# Add any paths that contain custom static files (such as style sheets) here,
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# relative to this directory. They are copied after the builtin static files,
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# so a file named "default.css" will overwrite the builtin "default.css".
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html_static_path = ["../_static"]
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# -- Options for HTMLHelp output ---------------------------------------------
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# Output file base name for HTML help builder.
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htmlhelp_basename = "pymc_experimentaldoc"
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# -- Options for LaTeX output ------------------------------------------------
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latex_elements = {
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# The paper size ('letterpaper' or 'a4paper').
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#
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# 'papersize': 'letterpaper',
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# The font size ('10pt', '11pt' or '12pt').
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#
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# 'pointsize': '10pt',
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# Additional stuff for the LaTeX preamble.
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#
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# 'preamble': '',
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# Latex figure (float) alignment
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#
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# 'figure_align': 'htbp',
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}
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# Grouping the document tree into LaTeX files. List of tuples
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# (source start file, target name, title,
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# author, documentclass [howto, manual, or own class]).
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latex_documents = [
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(
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master_doc,
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"pymc_experimental.tex",
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"pymc_experimental Documentation",
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"The developers of pymc_experimental",
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"manual",
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),
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]
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# -- Options for manual page output ------------------------------------------
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# One entry per manual page. List of tuples
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# (source start file, name, description, authors, manual section).
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man_pages = [(master_doc, "pymc_experimental", "pymc_experimental Documentation", [author], 1)]
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# -- Options for Texinfo output ----------------------------------------------
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# Grouping the document tree into Texinfo files. List of tuples
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# (source start file, target name, title, author,
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# dir menu entry, description, category)
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texinfo_documents = [
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(
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master_doc,
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"pymc_experimental",
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"pymc_experimental Documentation",
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author,
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"pymc_experimental",
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"One line description of project.",
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"Miscellaneous",
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),
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]
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# -- Options for Epub output -------------------------------------------------
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# Bibliographic Dublin Core info.
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epub_title = project
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# The unique identifier of the text. This can be a ISBN number
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# or the project homepage.
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#
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# epub_identifier = ''
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# A unique identification for the text.
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#
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# epub_uid = ''
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# A list of files that should not be packed into the epub file.
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epub_exclude_files = ["search.html"]
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# -- Extension configuration -------------------------------------------------
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# https://svn.python.org/projects/external/Jinja-1.1/docs/build/designerdoc.html

docs/source/index.rst

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PyMC experimental
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===================================================
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|Tests|
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|Coverage|
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|Black|
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.. |Tests| image:: https://github.com/pymc-devs/pymc-experimental/actions/workflows/test.yml/badge.svg
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:target: https://github.com/pymc-devs/pymc-experimental
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.. |Coverage| image:: https://codecov.io/gh/pymc-devs/pymc-experimental/branch/main/graph/badge.svg?token=ZqH0KCLKAE
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:target: https://codecov.io/gh/pymc-devs/pymc-experimental
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.. |Black| image:: https://img.shields.io/badge/code%20style-black-000000.svg
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:target: https://github.com/ambv/black
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Where we grow the next batch of cool PyMC features
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Dependencies
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============
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PyMC experimental is tested on Python 3.8+ and depends on PyMC V5.
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Installation
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============
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.. code-block:: bash
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pip install git+https://github.com/pymc-devs/pymc-experimental.git
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Contributing
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============
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We welcome contributions from interested individuals or groups! For information about contributing to PyMC experimental check out our instructions, policies, and guidelines `here <https://github.com/pymc-devs/pymc-experimental/blob/main/CONTRIBUTING.md>`_.
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Contributors
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============
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See the `GitHub contributor page <https://github.com/pymc-devs/pymc-experimental/graphs/contributors>`_.
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.. toctree::
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:hidden:
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api_reference <https://www.pymc.io/projects/experimental/en/latest/api_reference.html>

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