|
| 1 | +.. image:: https://cdn.rawgit.com/pymc-devs/pymc3/master/docs/logos/svg/PyMC3_banner.svg |
| 2 | + :height: 100px |
| 3 | + :alt: PyMC3 logo |
| 4 | + :align: center |
| 5 | + |
| 6 | +PyMC3 Examples |
| 7 | +============== |
| 8 | + |
| 9 | +Supporting examples and tutorials for PyMC3, the Python package for Bayesian statistical modeling and Probabilistic Machine Learning! |
| 10 | + |
| 11 | +Check out the `getting started guide <http://docs.pymc.io/notebooks/getting_started>`__, or |
| 12 | +`interact with live examples <https://mybinder.org/v2/gh/pymc-devs/pymc3/master?filepath=%2Fdocs%2Fsource%2Fnotebooks>`__ |
| 13 | +using Binder! |
| 14 | +For questions on PyMC3, head on over to our `PyMC Discourse <https://discourse.pymc.io/>`__ forum. |
| 15 | + |
| 16 | +Getting started |
| 17 | +=============== |
| 18 | + |
| 19 | +If you already know about Bayesian statistics: |
| 20 | +---------------------------------------------- |
| 21 | + |
| 22 | + |
| 23 | +- `API quickstart guide <http://docs.pymc.io/notebooks/api_quickstart>`__ |
| 24 | +- The `PyMC3 tutorial <http://docs.pymc.io/notebooks/getting_started>`__ |
| 25 | +- `PyMC3 examples <https://docs.pymc.io/nb_examples/index.html>`__ and the `API reference <http://docs.pymc.io/api>`__ |
| 26 | + |
| 27 | + |
| 28 | + |
| 29 | +Learn Bayesian statistics with a book together with PyMC3: |
| 30 | +---------------------------------------------------------- |
| 31 | + |
| 32 | +- `Probabilistic Programming and Bayesian Methods for Hackers <https://github.com/CamDavidsonPilon/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers>`__: Fantastic book with many applied code examples. |
| 33 | +- `PyMC3 port of the book "Doing Bayesian Data Analysis" by John Kruschke <https://github.com/aloctavodia/Doing_bayesian_data_analysis>`__ as well as the `second edition <https://github.com/JWarmenhoven/DBDA-python>`__: Principled introduction to Bayesian data analysis. |
| 34 | +- `PyMC3 port of the book "Statistical Rethinking A Bayesian Course with Examples in R and Stan" by Richard McElreath <https://github.com/pymc-devs/resources/tree/master/Rethinking>`__ |
| 35 | +- `PyMC3 port of the book "Bayesian Cognitive Modeling" by Michael Lee and EJ Wagenmakers <https://github.com/pymc-devs/resources/tree/master/BCM>`__: Focused on using Bayesian statistics in cognitive modeling. |
| 36 | +- `Bayesian Analysis with Python <https://www.packtpub.com/big-data-and-business-intelligence/bayesian-analysis-python-second-edition>`__ (second edition) by Osvaldo Martin: Great introductory book. (`code <https://github.com/aloctavodia/BAP>`__ and errata). |
| 37 | + |
| 38 | +PyMC3 talks |
| 39 | +----------- |
| 40 | + |
| 41 | +There are also several talks on PyMC3 which are gathered in this `YouTube playlist <https://www.youtube.com/playlist?list=PL1Ma_1DBbE82OVW8Fz_6Ts1oOeyOAiovy>`__ |
| 42 | +and as part of `PyMCon 2020 <https://discourse.pymc.io/c/pymcon/2020talks/15>`__ |
| 43 | + |
| 44 | +Installation |
| 45 | +------------ |
| 46 | + |
| 47 | +To install PyMC3 on your system, see its `installation section here <https://github.com/pymc-devs/pymc3#installation>`__ |
| 48 | + |
| 49 | +Citing PyMC3 |
| 50 | +============ |
| 51 | + |
| 52 | +Salvatier J., Wiecki T.V., Fonnesbeck C. (2016) Probabilistic programming |
| 53 | +in Python using PyMC3. PeerJ Computer Science 2:e55 |
| 54 | +`DOI: 10.7717/peerj-cs.55 <https://doi.org/10.7717/peerj-cs.55>`__. |
| 55 | + |
| 56 | +Papers citing PyMC3 |
| 57 | +------------------- |
| 58 | + |
| 59 | +See `Google Scholar <https://scholar.google.de/scholar?oi=bibs&hl=en&authuser=1&cites=6936955228135731011>`__ for a continuously updated list. |
| 60 | + |
| 61 | +Contributors |
| 62 | +============ |
| 63 | + |
| 64 | +See the `GitHub contributor |
| 65 | +page <https://github.com/pymc-devs/pymc-examples/graphs/contributors>`__. Also read our `Code of Conduct <https://github.com/pymc-devs/pymc3/blob/master/CODE_OF_CONDUCT.md>`__ guidelines for a better contributing experience. |
| 66 | + |
| 67 | + |
| 68 | +Contact |
| 69 | +======= |
| 70 | + |
| 71 | +We are using `discourse.pymc.io <https://discourse.pymc.io/>`__ as our main communication channel. You can also follow us on `Twitter @pymc_devs <https://twitter.com/pymc_devs>`__ for updates and other announcements. |
| 72 | + |
| 73 | +To ask a question regarding modeling or usage of PyMC3 we encourage posting to our Discourse forum under the `“Questions” Category <https://discourse.pymc.io/c/questions>`__. You can also suggest feature in the `“Development” Category <https://discourse.pymc.io/c/development>`__. |
| 74 | + |
| 75 | +To report an issue, please use the following: |
| 76 | + |
| 77 | +- `PyMC3 Examples - Issue Tracker <https://github.com/pymc-devs/pymc-examples/issues>`__. |
| 78 | +- `PyMC3 - Issue Tracker <https://github.com/pymc-devs/pymc3/issues>`__. |
| 79 | + |
| 80 | +Finally, if you need to get in touch for non-technical information about the project, ` send us an e-mail < [email protected]>`__. |
| 81 | + |
| 82 | +Support |
| 83 | +======= |
| 84 | + |
| 85 | +PyMC3 is a non-profit project under NumFOCUS umbrella. If you want to support PyMC3 financially, you can donate `here <https://numfocus.salsalabs.org/donate-to-pymc3/index.html>`__. |
| 86 | + |
| 87 | +PyMC for enterprise |
| 88 | +=================== |
| 89 | +`PyMC is now available as part of the Tidelift Subscription!` |
| 90 | + |
| 91 | +Tidelift is working with PyMC and the maintainers of thousands of other open source |
| 92 | +projects to deliver commercial support and maintenance for the open source dependencies |
| 93 | +you use to build your applications. Save time, reduce risk, and improve code health, |
| 94 | +while contributing financially to PyMC -- making it even more robust, reliable and, |
| 95 | +let's face it, amazing! |
| 96 | + |
| 97 | +|tidelift_learn| |tidelift_demo| |
| 98 | + |
| 99 | +Sponsors |
| 100 | +======== |
| 101 | + |
| 102 | +|NumFOCUS| |
| 103 | + |
| 104 | +|Quantopian| |
| 105 | + |
| 106 | +|ODSC| |
| 107 | + |
| 108 | +.. |Binder| image:: https://mybinder.org/badge_logo.svg |
| 109 | + :target: https://mybinder.org/v2/gh/pymc-devs/pymc3/master?filepath=%2Fdocs%2Fsource%2Fnotebooks |
| 110 | +.. |Build Status| image:: https://github.com/pymc-devs/pymc3/workflows/pytest/badge.svg |
| 111 | + :target: https://github.com/pymc-devs/pymc3/actions |
| 112 | +.. |Coverage| image:: https://codecov.io/gh/pymc-devs/pymc3/branch/master/graph/badge.svg |
| 113 | + :target: https://codecov.io/gh/pymc-devs/pymc3 |
| 114 | +.. |Dockerhub| image:: https://img.shields.io/docker/automated/pymc/pymc3.svg |
| 115 | + :target: https://hub.docker.com/r/pymc/pymc3 |
| 116 | +.. |NumFOCUS| image:: https://www.numfocus.org/wp-content/uploads/2017/03/1457562110.png |
| 117 | + :target: http://www.numfocus.org/ |
| 118 | +.. |Quantopian| image:: https://raw.githubusercontent.com/pymc-devs/pymc3/master/docs/quantopianlogo.jpg |
| 119 | + :target: https://quantopian.com |
| 120 | +.. |NumFOCUS_badge| image:: https://img.shields.io/badge/powered%20by-NumFOCUS-orange.svg?style=flat&colorA=E1523D&colorB=007D8A |
| 121 | + :target: http://www.numfocus.org/ |
| 122 | +.. |ODSC| image:: https://raw.githubusercontent.com/pymc-devs/pymc3/master/docs/odsc_logo.png |
| 123 | + :target: https://odsc.com |
| 124 | +.. |tidelift| image:: https://img.shields.io/badge/-lifted!-2dd160.svg?colorA=58595b&style=flat&logo=data:image/png;base64,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%2FwCjUTnDygkGoVERFQaZFlE9nreO%2BdM5u5wkifvuee892Pu3CyEcA0DeIc%2B9IwftJsR6Cko3uCjguZdjuBZhhwmYDjGrOC96WED41UtsgEdGEAPlmAfpuAbFF%2BFZLfoMfRBGzThDtLgePPwBIpdddGzOArhPHUXowbNptE2www6a%2Fm96Y3pHN7oQ1s%2B13pxt1ENaKzBFWyWzaJ%2BRO0C9Jny6VPSoKjLVbMDC5bn5OPuJF%2BBSe95PVEMuugY5AegS9fCh7BedP45hRnj8TC34QQUe9bTZyh2KgvFk2vc8GIlXyTfsvqr6bPpNgv52ynnlomZJNpB70Xhl%2Bf6Sa02p1bApEfnETwxVa%2Faj%2BW%2FFtHltmxS%2FO3krvpTtTnVgu%2F6gvHRFvG78Ef3kOe5PimJXycY74blT5R%2BAAAAAElFTkSuQmCC |
| 125 | + :target: https://tidelift.com/subscription/pkg/pypi-pymc3?utm_source=pypi-pymc3&utm_medium=referral&utm_campaign=enterprise |
| 126 | +.. |tidelift_learn| image:: https://img.shields.io/badge/-learn%20more-2dd160.svg?color=orange&labelColor=58595b&style=flat&logo=data:image/png;base64,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%2FwCjUTnDygkGoVERFQaZFlE9nreO%2BdM5u5wkifvuee892Pu3CyEcA0DeIc%2B9IwftJsR6Cko3uCjguZdjuBZhhwmYDjGrOC96WED41UtsgEdGEAPlmAfpuAbFF%2BFZLfoMfRBGzThDtLgePPwBIpdddGzOArhPHUXowbNptE2www6a%2Fm96Y3pHN7oQ1s%2B13pxt1ENaKzBFWyWzaJ%2BRO0C9Jny6VPSoKjLVbMDC5bn5OPuJF%2BBSe95PVEMuugY5AegS9fCh7BedP45hRnj8TC34QQUe9bTZyh2KgvFk2vc8GIlXyTfsvqr6bPpNgv52ynnlomZJNpB70Xhl%2Bf6Sa02p1bApEfnETwxVa%2Faj%2BW%2FFtHltmxS%2FO3krvpTtTnVgu%2F6gvHRFvG78Ef3kOe5PimJXycY74blT5R%2BAAAAAElFTkSuQmCC |
| 127 | + :target: https://tidelift.com/subscription/pkg/pypi-pymc3?utm_source=pypi-pymc3&utm_medium=referral&utm_campaign=enterprise |
| 128 | +.. |tidelift_demo| image:: https://img.shields.io/badge/-request%20a%20demo-2dd160.svg?color=orange&labelColor=58595b&style=flat&logo=data:image/png;base64,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%2FwCjUTnDygkGoVERFQaZFlE9nreO%2BdM5u5wkifvuee892Pu3CyEcA0DeIc%2B9IwftJsR6Cko3uCjguZdjuBZhhwmYDjGrOC96WED41UtsgEdGEAPlmAfpuAbFF%2BFZLfoMfRBGzThDtLgePPwBIpdddGzOArhPHUXowbNptE2www6a%2Fm96Y3pHN7oQ1s%2B13pxt1ENaKzBFWyWzaJ%2BRO0C9Jny6VPSoKjLVbMDC5bn5OPuJF%2BBSe95PVEMuugY5AegS9fCh7BedP45hRnj8TC34QQUe9bTZyh2KgvFk2vc8GIlXyTfsvqr6bPpNgv52ynnlomZJNpB70Xhl%2Bf6Sa02p1bApEfnETwxVa%2Faj%2BW%2FFtHltmxS%2FO3krvpTtTnVgu%2F6gvHRFvG78Ef3kOe5PimJXycY74blT5R%2BAAAAAElFTkSuQmCC |
| 129 | + :target: https://tidelift.com/subscription/request-a-demo?utm_source=pypi-pymc3&utm_medium=referral&utm_campaign=enterprise |
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