diff --git a/pyproject.toml b/pyproject.toml
index 96e8ea90afa59..d9e5b89b0f141 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -498,20 +498,10 @@ filterwarnings = [
   "ignore::ResourceWarning:asyncio",
   # From plotting doctests
   "ignore:More than 20 figures have been opened:RuntimeWarning",
-  # Will be fixed in numba 0.56: https://github.com/numba/numba/issues/7758
-  "ignore:`np.MachAr` is deprecated:DeprecationWarning:numba",
   "ignore:.*urllib3:DeprecationWarning:botocore",
   "ignore:Setuptools is replacing distutils.:UserWarning:_distutils_hack",
   # https://github.com/PyTables/PyTables/issues/822
   "ignore:a closed node found in the registry:UserWarning:tables",
-  "ignore:`np.object` is a deprecated:DeprecationWarning:tables",
-  "ignore:tostring:DeprecationWarning:tables",
-  "ignore:distutils Version classes are deprecated:DeprecationWarning:pandas_datareader",
-  "ignore:distutils Version classes are deprecated:DeprecationWarning:numexpr",
-  "ignore:distutils Version classes are deprecated:DeprecationWarning:fastparquet",
-  "ignore:distutils Version classes are deprecated:DeprecationWarning:fsspec",
-  # Can be removed once https://github.com/numpy/numpy/pull/24794 is merged
-  "ignore:.*In the future `np.long` will be defined as.*:FutureWarning",
 ]
 junit_family = "xunit2"
 markers = [
diff --git a/scripts/tests/data/deps_minimum.toml b/scripts/tests/data/deps_minimum.toml
index 0424920e5f446..ca1dc0c961c42 100644
--- a/scripts/tests/data/deps_minimum.toml
+++ b/scripts/tests/data/deps_minimum.toml
@@ -494,14 +494,11 @@ exclude_lines = [
   "pragma: no cover",
   # Don't complain about missing debug-only code:s
   "def __repr__",
-  "if self.debug",
   # Don't complain if tests don't hit defensive assertion code:
   "raise AssertionError",
   "raise NotImplementedError",
   "AbstractMethodError",
   # Don't complain if non-runnable code isn't run:
-  "if 0:",
-  "if __name__ == .__main__.:",
   "if TYPE_CHECKING:",
 ]