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0.13.1: strange PyTables error #8167

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bluefir opened this issue Sep 3, 2014 · 3 comments
Closed

0.13.1: strange PyTables error #8167

bluefir opened this issue Sep 3, 2014 · 3 comments

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@bluefir
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bluefir commented Sep 3, 2014

What should I do with this?

File "C:\Python27\lib\site-packages\pandas\io\pytables.py", line 914, in append
    **kwargs)
  File "C:\Python27\lib\site-packages\pandas\io\pytables.py", line 1273, in _write_to_group
    s.write(obj=value, append=append, complib=complib, **kwargs)
  File "C:\Python27\lib\site-packages\pandas\io\pytables.py", line 3589, in write
    self.set_attrs()
  File "C:\Python27\lib\site-packages\pandas\io\pytables.py", line 2887, in set_attrs
    self.attrs.non_index_axes = self.non_index_axes
  File "C:\Python27\lib\site-packages\tables\attributeset.py", line 455, in __setattr__
    self._g__setattr(name, value)
  File "C:\Python27\lib\site-packages\tables\attributeset.py", line 397, in _g__setattr
    self._g_setattr(self._v_node, name, stvalue)
  File "hdf5extension.pyx", line 704, in tables.hdf5extension.AttributeSet._g_setattr (tables\hdf5extension.c:6832)
tables.exceptions.HDF5ExtError: HDF5 error back trace

  File "..\..\hdf5-1.8.11\src\H5A.c", line 254, in H5Acreate2
    unable to create attribute
  File "..\..\hdf5-1.8.11\src\H5A.c", line 503, in H5A_create
    unable to create attribute in object header
  File "..\..\hdf5-1.8.11\src\H5Oattribute.c", line 347, in H5O_attr_create
    unable to create new attribute in header
  File "..\..\hdf5-1.8.11\src\H5Omessage.c", line 224, in H5O_msg_append_real
    unable to create new message
  File "..\..\hdf5-1.8.11\src\H5Omessage.c", line 1945, in H5O_msg_alloc
    unable to allocate space for message
  File "..\..\hdf5-1.8.11\src\H5Oalloc.c", line 1142, in H5O_alloc
    object header message is too large

End of HDF5 error back trace

Can't set attribute 'non_index_axes' in node:
 /universe_liquid/alpha_adv_deciles/groups/raw/AAM_demean_groups/portfolio_returns/return_daily_benchmark (Group) u''.
@jreback
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jreback commented Sep 3, 2014

attributes that u set are limited to 64kb

can u show df.info() on tht frame u r storing?

@bluefir
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bluefir commented Sep 3, 2014

I have a log with some info:

2014-09-03 10:13:23,196 ERROR    pmt.general.Utilities - save_data: DataFrame columns are [('Growth', '1', '1'), ('Growth', '1', '2'), ('Growth', '1', '3'), ('Growth', '1', '4'), ('Growth', '1', '5'), ('Growth', '1', '6'), ('Growth', '1', '7'), ('Growth', '1', '8'), ('Growth', '1', '9'), ('Growth', '1', '10'), ('Growth', '2', '1'), ('Growth', '2', '2'), ('Growth', '2', '3'), ('Growth', '2', '4'), ('Growth', '2', '5'), ('Growth', '2', '6'), ('Growth', '2', '7'), ('Growth', '2', '8'), ('Growth', '2', '9'), ('Growth', '2', '10'), ('Growth', '3', '1'), ('Growth', '3', '2'), ('Growth', '3', '3'), ('Growth', '3', '4'), ('Growth', '3', '5'), ('Growth', '3', '6'), ('Growth', '3', '7'), ('Growth', '3', '8'), ('Growth', '3', '9'), ('Growth', '3', '10'), ('Growth', '4', '1'), ('Growth', '4', '2'), ('Growth', '4', '3'), ('Growth', '4', '4'), ('Growth', '4', '5'), ('Growth', '4', '6'), ('Growth', '4', '7'), ('Growth', '4', '8'), ('Growth', '4', '9'), ('Growth', '4', '10'), ('Growth', '5', '1'), ('Growth', '5', '2'), ('Growth', '5', '3'), ('Growth', '5', '4'), ('Growth', '5', '5'), ('Growth', '5', '6'), ('Growth', '5', '7'), ('Growth', '5', '8'), ('Growth', '5', '9'), ('Growth', '5', '10'), ('Growth', '6', '1'), ('Growth', '6', '2'), ('Growth', '6', '3'), ('Growth', '6', '4'), ('Growth', '6', '5'), ('Growth', '6', '6'), ('Growth', '6', '7'), ('Growth', '6', '8'), ('Growth', '6', '9'), ('Growth', '6', '10'), ('Growth', '7', '1'), ('Growth', '7', '2'), ('Growth', '7', '3'), ('Growth', '7', '4'), ('Growth', '7', '5'), ('Growth', '7', '6'), ('Growth', '7', '7'), ('Growth', '7', '8'), ('Growth', '7', '9'), ('Growth', '7', '10'), ('Growth', '8', '1'), ('Growth', '8', '2'), ('Growth', '8', '3'), ('Growth', '8', '4'), ('Growth', '8', '5'), ('Growth', '8', '6'), ('Growth', '8', '7'), ('Growth', '8', '8'), ('Growth', '8', '9'), ('Growth', '8', '10'), ('Growth', '9', '1'), ('Growth', '9', '2'), ('Growth', '9', '3'), ('Growth', '9', '4'), ('Growth', '9', '5'), ('Growth', '9', '6'), 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('Momentum', '3', '9'), ('Momentum', '3', '10'), ('Momentum', '4', '1'), ('Momentum', '4', '2'), ('Momentum', '4', '3'), ('Momentum', '4', '4'), ('Momentum', '4', '5'), ('Momentum', '4', '6'), ('Momentum', '4', '7'), ('Momentum', '4', '8'), ('Momentum', '4', '9'), ('Momentum', '4', '10'), ('Momentum', '5', '1'), ('Momentum', '5', '2'), ('Momentum', '5', '3'), ('Momentum', '5', '4'), ('Momentum', '5', '5'), ('Momentum', '5', '6'), ('Momentum', '5', '7'), ('Momentum', '5', '8'), ('Momentum', '5', '9'), ('Momentum', '5', '10'), ('Momentum', '6', '1'), ('Momentum', '6', '2'), ('Momentum', '6', '3'), ('Momentum', '6', '4'), ('Momentum', '6', '5'), ('Momentum', '6', '6'), ('Momentum', '6', '7'), ('Momentum', '6', '8'), ('Momentum', '6', '9'), ('Momentum', '6', '10'), ('Momentum', '7', '1'), ('Momentum', '7', '2'), ('Momentum', '7', '3'), ('Momentum', '7', '4'), ('Momentum', '7', '5'), ('Momentum', '7', '6'), ('Momentum', '7', '7'), ('Momentum', '7', '8'), ('Momentum', '7', '9'), ('Momentum', 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'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64', 'float64']
2014-09-03 10:13:23,207 ERROR    pmt.general.Utilities - save_data: DataFrame index type is <class 'pandas.tseries.index.DatetimeIndex'>
2014-09-03 10:13:23,207 ERROR    pmt.general.Utilities - save_data: <class 'tables.exceptions.HDF5ExtError'>: Can't set attribute 'non_index_axes' in node:
 /universe_liquid/alpha_adv_deciles/groups/raw/AAM_demean_groups/portfolio_returns/return_daily_benchmark (Group) u''.

As you can see, columns are MultiIndex with three levels.

Anyway, I regenerated the whole thing and it seemed to work. I was getting that error when I was trying to combine the old data with the new one. So, cannot replicate, so never mind. Sorry for all the confusion. If I see it again, I'll let you know.

@bluefir bluefir closed this as completed Sep 3, 2014
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jreback commented Sep 3, 2014

see this issue: #6245

currently it's possible to have a very large frame (column wise) which breaks the meta data

just store smaller (width) tables

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