We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Initializing an IntervalTree with arrays containing np.nan can trigger a RuntimeWarning:
IntervalTree
np.nan
RuntimeWarning
In [2]: left, right = [0, 1, 2, np.nan], [1, 2, 3, np.nan] In [3]: tree = pd._libs.interval.IntervalTree(left, right, leaf_size=2) /home/jeremy/anaconda3/lib/python3.6/site-packages/numpy/lib/function_base.py:4033: RuntimeWarning: Invalid value encountered in median r = func(a, **kwargs)
This causes some attributes to be incorrectly set as np.nan, which can lead to incorrect results:
In [4]: tree.get_loc(0.5) Out[4]: array([0, 1, 2, 3])
Initializing an IntervalTree with data containing np.nan triggers a RuntimeWarning and can lead to incorrect results.
I'd expect no warnings to be raised and for the get_loc query to be correct.
get_loc
pd.show_versions()
commit: 437f31c python: 3.6.5.final.0 python-bits: 64 OS: Linux OS-release: 4.14.29-galliumos machine: x86_64 processor: x86_64 byteorder: little LC_ALL: None LANG: en_US.UTF-8 LOCALE: en_US.UTF-8
pandas: 0.24.0.dev0+824.g437f31c pytest: 3.5.1 pip: 18.0 setuptools: 39.1.0 Cython: 0.28.2 numpy: 1.14.3 scipy: 1.1.0 pyarrow: None xarray: None IPython: 6.4.0 sphinx: 1.7.4 patsy: 0.5.0 dateutil: 2.7.3 pytz: 2018.4 blosc: None bottleneck: 1.2.1 tables: 3.4.3 numexpr: 2.6.5 feather: None matplotlib: 2.2.2 openpyxl: 2.5.3 xlrd: 1.1.0 xlwt: 1.3.0 xlsxwriter: 1.0.4 lxml: 4.2.1 bs4: 4.6.0 html5lib: 1.0.1 sqlalchemy: 1.2.7 pymysql: None psycopg2: None jinja2: 2.10 s3fs: None fastparquet: None pandas_gbq: None pandas_datareader: None gcsfs: None
The text was updated successfully, but these errors were encountered:
Successfully merging a pull request may close this issue.
Code Sample, a copy-pastable example if possible
Initializing an
IntervalTree
with arrays containingnp.nan
can trigger aRuntimeWarning
:This causes some attributes to be incorrectly set as
np.nan
, which can lead to incorrect results:Problem description
Initializing an
IntervalTree
with data containingnp.nan
triggers aRuntimeWarning
and can lead to incorrect results.Expected Output
I'd expect no warnings to be raised and for the
get_loc
query to be correct.Output of
pd.show_versions()
INSTALLED VERSIONS
commit: 437f31c
python: 3.6.5.final.0
python-bits: 64
OS: Linux
OS-release: 4.14.29-galliumos
machine: x86_64
processor: x86_64
byteorder: little
LC_ALL: None
LANG: en_US.UTF-8
LOCALE: en_US.UTF-8
pandas: 0.24.0.dev0+824.g437f31c
pytest: 3.5.1
pip: 18.0
setuptools: 39.1.0
Cython: 0.28.2
numpy: 1.14.3
scipy: 1.1.0
pyarrow: None
xarray: None
IPython: 6.4.0
sphinx: 1.7.4
patsy: 0.5.0
dateutil: 2.7.3
pytz: 2018.4
blosc: None
bottleneck: 1.2.1
tables: 3.4.3
numexpr: 2.6.5
feather: None
matplotlib: 2.2.2
openpyxl: 2.5.3
xlrd: 1.1.0
xlwt: 1.3.0
xlsxwriter: 1.0.4
lxml: 4.2.1
bs4: 4.6.0
html5lib: 1.0.1
sqlalchemy: 1.2.7
pymysql: None
psycopg2: None
jinja2: 2.10
s3fs: None
fastparquet: None
pandas_gbq: None
pandas_datareader: None
gcsfs: None
The text was updated successfully, but these errors were encountered: