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‎.github/workflows/codeql.yml

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@@ -0,0 +1,31 @@
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name: CodeQL
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on:
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schedule:
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# every day at midnight
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- cron: "0 0 * * *"
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concurrency:
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group: ${{ github.repository }}-${{ github.head_ref || github.sha }}-${{ github.workflow }}
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cancel-in-progress: true
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jobs:
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analyze:
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runs-on: ubuntu-latest
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permissions:
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actions: read
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contents: read
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security-events: write
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19+
strategy:
20+
fail-fast: false
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matrix:
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language:
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- python
24+
25+
steps:
26+
- uses: actions/checkout@v3
27+
- uses: github/codeql-action/init@v2
28+
with:
29+
languages: ${{ matrix.language }}
30+
- uses: github/codeql-action/autobuild@v2
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- uses: github/codeql-action/analyze@v2

‎.github/workflows/sdist.yml

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run: |
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case "${{matrix.python-version}}" in
8181
3.8)
82-
pip install numpy==1.19.5 ;;
82+
pip install numpy==1.20.3 ;;
8383
3.9)
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pip install numpy==1.19.5 ;;
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pip install numpy==1.20.3 ;;
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3.10)
8686
pip install numpy==1.21.2 ;;
8787
esac

‎.pre-commit-config.yaml

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@@ -85,32 +85,42 @@ repos:
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- repo: local
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hooks:
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- id: pyright
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# note: assumes python env is setup and activated
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name: pyright
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entry: pyright
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# note: assumes python env is setup and activated
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language: node
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pass_filenames: false
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types: [python]
9494
stages: [manual]
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additional_dependencies: &pyright_dependencies
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- [email protected].258
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- [email protected].264
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- id: pyright_reportGeneralTypeIssues
98+
# note: assumes python env is setup and activated
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name: pyright reportGeneralTypeIssues
99100
entry: pyright --skipunannotated -p pyright_reportGeneralTypeIssues.json
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# note: assumes python env is setup and activated
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language: node
102102
pass_filenames: false
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types: [python]
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stages: [manual]
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additional_dependencies: *pyright_dependencies
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- id: mypy
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# note: assumes python env is setup and activated
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name: mypy
108109
entry: mypy
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# note: assumes python env is setup and activated
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language: system
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pass_filenames: false
112112
types: [python]
113113
stages: [manual]
114+
- id: stubtest
115+
# note: assumes python env is setup and activated
116+
# note: requires pandas dev to be installed
117+
name: mypy (stubtest)
118+
entry: python
119+
language: system
120+
pass_filenames: false
121+
types: [pyi]
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args: [scripts/run_stubtest.py]
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stages: [manual]
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- id: flake8-rst
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name: flake8-rst
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description: Run flake8 on code snippets in docstrings or RST files
@@ -230,7 +240,7 @@ repos:
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language: python
231241
additional_dependencies:
232242
- flake8==4.0.1
233-
- flake8-pyi==22.5.1
243+
- flake8-pyi==22.7.0
234244
- id: future-annotations
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name: import annotations from __future__
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entry: 'from __future__ import annotations'

‎asv_bench/asv.conf.json

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@@ -42,7 +42,7 @@
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// followed by the pip installed packages).
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"matrix": {
4444
"numpy": [],
45-
"Cython": ["0.29.30"],
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"Cython": ["0.29.32"],
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"matplotlib": [],
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"sqlalchemy": [],
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"scipy": [],

‎ci/code_checks.sh

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@@ -78,8 +78,8 @@ fi
7878
### DOCSTRINGS ###
7979
if [[ -z "$CHECK" || "$CHECK" == "docstrings" ]]; then
8080

81-
MSG='Validate docstrings (EX04, GL01, GL02, GL03, GL04, GL05, GL06, GL07, GL09, GL10, PR03, PR04, PR05, PR06, PR08, PR09, PR10, RT01, RT04, RT05, SA02, SA03, SA04, SS01, SS02, SS03, SS04, SS05)' ; echo $MSG
82-
$BASE_DIR/scripts/validate_docstrings.py --format=actions --errors=EX04,GL01,GL02,GL03,GL04,GL05,GL06,GL07,GL09,GL10,PR03,PR04,PR05,PR06,PR08,PR09,PR10,RT01,RT04,RT05,SA02,SA03,SA04,SS01,SS02,SS03,SS04,SS05
81+
MSG='Validate docstrings (EX04, GL01, GL02, GL03, GL04, GL05, GL06, GL07, GL09, GL10, PR03, PR04, PR05, PR06, PR08, PR09, PR10, RT01, RT04, RT05, SA02, SA03, SA04, SS01, SS02, SS03, SS04, SS05, SS06)' ; echo $MSG
82+
$BASE_DIR/scripts/validate_docstrings.py --format=actions --errors=EX04,GL01,GL02,GL03,GL04,GL05,GL06,GL07,GL09,GL10,PR03,PR04,PR05,PR06,PR08,PR09,PR10,RT01,RT04,RT05,SA02,SA03,SA04,SS01,SS02,SS03,SS04,SS05,SS06
8383
RET=$(($RET + $?)) ; echo $MSG "DONE"
8484

8585
fi

‎ci/deps/actions-310-numpydev.yaml

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@@ -16,8 +16,7 @@ dependencies:
1616
- pytz
1717
- pip
1818
- pip:
19-
#- cython # TODO: don't install from master after Cython 3.0.0a11 is released
20-
- "git+https://github.com/cython/cython.git@master"
19+
- "cython"
2120
- "--extra-index-url https://pypi.anaconda.org/scipy-wheels-nightly/simple"
2221
- "--pre"
2322
- "numpy"

‎ci/deps/actions-310.yaml

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@@ -5,7 +5,7 @@ dependencies:
55
- python=3.10
66

77
# test dependencies
8-
- cython=0.29.30
8+
- cython>=0.29.32
99
- pytest>=6.0
1010
- pytest-cov
1111
- pytest-xdist>=1.31
@@ -47,6 +47,7 @@ dependencies:
4747
- scipy
4848
- sqlalchemy
4949
- tabulate
50+
- tzdata>=2022a
5051
- xarray
5152
- xlrd
5253
- xlsxwriter

‎ci/deps/actions-38-downstream_compat.yaml

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@@ -6,7 +6,7 @@ dependencies:
66
- python=3.8
77

88
# test dependencies
9-
- cython=0.29.30
9+
- cython>=0.29.32
1010
- pytest>=6.0
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- pytest-cov
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- pytest-xdist>=1.31

‎ci/deps/actions-38-minimum_versions.yaml

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@@ -7,7 +7,7 @@ dependencies:
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- python=3.8.0
88

99
# test dependencies
10-
- cython=0.29.30
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- cython>=0.29.32
1111
- pytest>=6.0
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- pytest-cov
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- pytest-xdist>=1.31
@@ -17,7 +17,7 @@ dependencies:
1717

1818
# required dependencies
1919
- python-dateutil=2.8.1
20-
- numpy=1.19.5
20+
- numpy=1.20.3
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- pytz=2020.1
2222

2323
# optional dependencies
@@ -49,6 +49,7 @@ dependencies:
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- scipy=1.7.1
5050
- sqlalchemy=1.4.16
5151
- tabulate=0.8.9
52+
- tzdata=2022a
5253
- xarray=0.19.0
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- xlrd=2.0.1
5455
- xlsxwriter=1.4.3

‎ci/deps/actions-38.yaml

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@@ -5,7 +5,7 @@ dependencies:
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- python=3.8
66

77
# test dependencies
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- cython=0.29.30
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- cython>=0.29.32
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- pytest>=6.0
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- pytest-cov
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- pytest-xdist>=1.31

‎ci/deps/actions-39.yaml

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@@ -5,7 +5,7 @@ dependencies:
55
- python=3.9
66

77
# test dependencies
8-
- cython=0.29.30
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- cython>=0.29.32
99
- pytest>=6.0
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- pytest-cov
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- pytest-xdist>=1.31
@@ -47,6 +47,7 @@ dependencies:
4747
- scipy
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- sqlalchemy
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- tabulate
50+
- tzdata>=2022a
5051
- xarray
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- xlrd
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- xlsxwriter

‎ci/deps/actions-pypy-38.yaml

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88
- python=3.8[build=*_pypy] # TODO: use this once pypy3.8 is available
99

1010
# tools
11-
- cython>=0.29.30
11+
- cython>=0.29.32
1212
- pytest>=6.0
1313
- pytest-cov
1414
- pytest-asyncio

‎ci/deps/circle-38-arm64.yaml

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@@ -5,7 +5,7 @@ dependencies:
55
- python=3.8
66

77
# test dependencies
8-
- cython=0.29.30
8+
- cython>=0.29.32
99
- pytest>=6.0
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- pytest-cov
1111
- pytest-xdist>=1.31

‎doc/source/conf.py

+24-12
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@@ -50,23 +50,25 @@
5050
# sphinxext.
5151

5252
extensions = [
53-
"sphinx.ext.autodoc",
54-
"sphinx.ext.autosummary",
55-
"sphinx.ext.doctest",
56-
"sphinx.ext.extlinks",
57-
"sphinx.ext.todo",
58-
"numpydoc", # handle NumPy documentation formatted docstrings
53+
"contributors", # custom pandas extension
5954
"IPython.sphinxext.ipython_directive",
6055
"IPython.sphinxext.ipython_console_highlighting",
6156
"matplotlib.sphinxext.plot_directive",
62-
"sphinx.ext.intersphinx",
57+
"numpydoc",
58+
"sphinx_copybutton",
59+
"sphinx_panels",
60+
"sphinx_toggleprompt",
61+
"sphinx.ext.autodoc",
62+
"sphinx.ext.autosummary",
6363
"sphinx.ext.coverage",
64-
"sphinx.ext.mathjax",
64+
"sphinx.ext.doctest",
65+
"sphinx.ext.extlinks",
6566
"sphinx.ext.ifconfig",
67+
"sphinx.ext.intersphinx",
6668
"sphinx.ext.linkcode",
69+
"sphinx.ext.mathjax",
70+
"sphinx.ext.todo",
6771
"nbsphinx",
68-
"sphinx_panels",
69-
"contributors", # custom pandas extension
7072
]
7173

7274
exclude_patterns = [
@@ -144,6 +146,9 @@
144146
# already loads it
145147
panels_add_bootstrap_css = False
146148

149+
# https://sphinx-toggleprompt.readthedocs.io/en/stable/#offset
150+
toggleprompt_offset_right = 35
151+
147152
# Add any paths that contain templates here, relative to this directory.
148153
templates_path = ["../_templates"]
149154

@@ -453,7 +458,6 @@
453458
# extlinks alias
454459
extlinks = {
455460
"issue": ("https://github.com/pandas-dev/pandas/issues/%s", "GH"),
456-
"wiki": ("https://github.com/pandas-dev/pandas/wiki/%s", "wiki "),
457461
}
458462

459463

@@ -649,12 +653,20 @@ def linkcode_resolve(domain, info):
649653
try:
650654
fn = inspect.getsourcefile(inspect.unwrap(obj))
651655
except TypeError:
652-
fn = None
656+
try: # property
657+
fn = inspect.getsourcefile(inspect.unwrap(obj.fget))
658+
except (AttributeError, TypeError):
659+
fn = None
653660
if not fn:
654661
return None
655662

656663
try:
657664
source, lineno = inspect.getsourcelines(obj)
665+
except TypeError:
666+
try: # property
667+
source, lineno = inspect.getsourcelines(obj.fget)
668+
except (AttributeError, TypeError):
669+
lineno = None
658670
except OSError:
659671
lineno = None
660672

‎doc/source/ecosystem.rst

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@@ -161,10 +161,10 @@ A good implementation for Python users is `has2k1/plotnine <https://github.com/h
161161
`IPython Vega <https://github.com/vega/ipyvega>`__ leverages `Vega
162162
<https://github.com/vega/vega>`__ to create plots within Jupyter Notebook.
163163

164-
`Plotly <https://poltly.com/python>`__
164+
`Plotly <https://plotly.com/python>`__
165165
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
166166

167-
`Plotly’s <https://poltly.com/>`__ `Python API <https://poltly.com/python/>`__ enables interactive figures and web shareability. Maps, 2D, 3D, and live-streaming graphs are rendered with WebGL and `D3.js <https://d3js.org/>`__. The library supports plotting directly from a pandas DataFrame and cloud-based collaboration. Users of `matplotlib, ggplot for Python, and Seaborn <https://poltly.com/python/matplotlib-to-plotly-tutorial/>`__ can convert figures into interactive web-based plots. Plots can be drawn in `IPython Notebooks <https://plotly.com/ipython-notebooks/>`__ , edited with R or MATLAB, modified in a GUI, or embedded in apps and dashboards. Plotly is free for unlimited sharing, and has `offline <https://poltly.com/python/offline/>`__, or `on-premise <https://poltly.com/product/enterprise/>`__ accounts for private use.
167+
`Plotly’s <https://plotly.com/>`__ `Python API <https://plotly.com/python/>`__ enables interactive figures and web shareability. Maps, 2D, 3D, and live-streaming graphs are rendered with WebGL and `D3.js <https://d3js.org/>`__. The library supports plotting directly from a pandas DataFrame and cloud-based collaboration. Users of `matplotlib, ggplot for Python, and Seaborn <https://plotly.com/python/matplotlib-to-plotly-tutorial/>`__ can convert figures into interactive web-based plots. Plots can be drawn in `IPython Notebooks <https://plotly.com/ipython-notebooks/>`__ , edited with R or MATLAB, modified in a GUI, or embedded in apps and dashboards. Plotly is free for unlimited sharing, and has `offline <https://plotly.com/python/offline/>`__, or `on-premise <https://plotly.com/product/enterprise/>`__ accounts for private use.
168168

169169
`Lux <https://github.com/lux-org/lux>`__
170170
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -591,12 +591,12 @@ Library Accessor Classes Description
591591
Development tools
592592
-----------------
593593

594-
`pandas-stubs <https://github.com/VirtusLab/pandas-stubs>`__
595-
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
594+
`pandas-stubs <https://github.com/pandas-dev/pandas-stubs>`__
595+
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
596596

597597
While pandas repository is partially typed, the package itself doesn't expose this information for external use.
598598
Install pandas-stubs to enable basic type coverage of pandas API.
599599

600600
Learn more by reading through :issue:`14468`, :issue:`26766`, :issue:`28142`.
601601

602-
See installation and usage instructions on the `github page <https://github.com/VirtusLab/pandas-stubs>`__.
602+
See installation and usage instructions on the `github page <https://github.com/pandas-dev/pandas-stubs>`__.

‎doc/source/getting_started/install.rst

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@@ -235,7 +235,7 @@ Dependencies
235235
================================================================ ==========================
236236
Package Minimum supported version
237237
================================================================ ==========================
238-
`NumPy <https://numpy.org>`__ 1.19.5
238+
`NumPy <https://numpy.org>`__ 1.20.3
239239
`python-dateutil <https://dateutil.readthedocs.io/en/stable/>`__ 2.8.1
240240
`pytz <https://pypi.org/project/pytz/>`__ 2020.1
241241
================================================================ ==========================
@@ -270,6 +270,23 @@ For example, :func:`pandas.read_hdf` requires the ``pytables`` package, while
270270
optional dependency is not installed, pandas will raise an ``ImportError`` when
271271
the method requiring that dependency is called.
272272

273+
Timezones
274+
^^^^^^^^^
275+
276+
========================= ========================= =============================================================
277+
Dependency Minimum Version Notes
278+
========================= ========================= =============================================================
279+
tzdata 2022.1(pypi)/ Allows the use of ``zoneinfo`` timezones with pandas.
280+
2022a(for system tzdata) **Note**: You only need to install the pypi package if your
281+
system does not already provide the IANA tz database.
282+
However, the minimum tzdata version still applies, even if it
283+
is not enforced through an error.
284+
285+
If you would like to keep your system tzdata version updated,
286+
it is recommended to use the ``tzdata`` package from
287+
conda-forge.
288+
========================= ========================= =============================================================
289+
273290
Visualization
274291
^^^^^^^^^^^^^
275292

‎doc/source/getting_started/intro_tutorials/10_text_data.rst

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@@ -179,7 +179,7 @@ applied to integers, so no ``str`` is used.
179179
180180
Based on the index name of the row (``307``) and the column (``Name``),
181181
we can do a selection using the ``loc`` operator, introduced in the
182-
`tutorial on subsetting <3_subset_data.ipynb>`__.
182+
:ref:`tutorial on subsetting <10min_tut_03_subset>`.
183183

184184
.. raw:: html
185185

‎doc/source/reference/general_functions.rst

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@@ -85,4 +85,4 @@ Importing from other DataFrame libraries
8585
.. autosummary::
8686
:toctree: api/
8787

88-
api.exchange.from_dataframe
88+
api.interchange.from_dataframe

‎doc/source/reference/style.rst

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@@ -41,6 +41,7 @@ Style application
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Styler.applymap_index
4242
Styler.format
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Styler.format_index
44+
Styler.relabel_index
4445
Styler.hide
4546
Styler.concat
4647
Styler.set_td_classes

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