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string_arrow.py
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# pyright: reportGeneralTypeIssues = false
from __future__ import annotations
from collections.abc import Callable # noqa: PDF001
import re
from typing import (
TYPE_CHECKING,
Any,
Union,
cast,
overload,
)
import numpy as np
from pandas._libs import (
lib,
missing as libmissing,
)
from pandas._typing import (
Dtype,
NpDtype,
PositionalIndexer,
Scalar,
ScalarIndexer,
SequenceIndexer,
TakeIndexer,
npt,
)
from pandas.compat import (
pa_version_under1p01,
pa_version_under2p0,
pa_version_under3p0,
pa_version_under4p0,
)
from pandas.util._decorators import doc
from pandas.core.dtypes.common import (
is_array_like,
is_bool_dtype,
is_dtype_equal,
is_integer,
is_integer_dtype,
is_object_dtype,
is_scalar,
is_string_dtype,
pandas_dtype,
)
from pandas.core.dtypes.missing import isna
from pandas.core.arraylike import OpsMixin
from pandas.core.arrays._mixins import ArrowExtensionArray
from pandas.core.arrays.base import ExtensionArray
from pandas.core.arrays.boolean import BooleanDtype
from pandas.core.arrays.integer import Int64Dtype
from pandas.core.arrays.numeric import NumericDtype
from pandas.core.arrays.string_ import (
BaseStringArray,
StringDtype,
)
from pandas.core.indexers import (
check_array_indexer,
unpack_tuple_and_ellipses,
validate_indices,
)
from pandas.core.strings.object_array import ObjectStringArrayMixin
if not pa_version_under1p01:
import pyarrow as pa
import pyarrow.compute as pc
ARROW_CMP_FUNCS = {
"eq": pc.equal,
"ne": pc.not_equal,
"lt": pc.less,
"gt": pc.greater,
"le": pc.less_equal,
"ge": pc.greater_equal,
}
if TYPE_CHECKING:
from pandas import Series
ArrowStringScalarOrNAT = Union[str, libmissing.NAType]
def _chk_pyarrow_available() -> None:
if pa_version_under1p01:
msg = "pyarrow>=1.0.0 is required for PyArrow backed StringArray."
raise ImportError(msg)
# TODO: Inherit directly from BaseStringArrayMethods. Currently we inherit from
# ObjectStringArrayMixin because we want to have the object-dtype based methods as
# fallback for the ones that pyarrow doesn't yet support
class ArrowStringArray(
OpsMixin, ArrowExtensionArray, BaseStringArray, ObjectStringArrayMixin
):
"""
Extension array for string data in a ``pyarrow.ChunkedArray``.
.. versionadded:: 1.2.0
.. warning::
ArrowStringArray is considered experimental. The implementation and
parts of the API may change without warning.
Parameters
----------
values : pyarrow.Array or pyarrow.ChunkedArray
The array of data.
Attributes
----------
None
Methods
-------
None
See Also
--------
array
The recommended function for creating a ArrowStringArray.
Series.str
The string methods are available on Series backed by
a ArrowStringArray.
Notes
-----
ArrowStringArray returns a BooleanArray for comparison methods.
Examples
--------
>>> pd.array(['This is', 'some text', None, 'data.'], dtype="string[pyarrow]")
<ArrowStringArray>
['This is', 'some text', <NA>, 'data.']
Length: 4, dtype: string
"""
def __init__(self, values):
self._dtype = StringDtype(storage="pyarrow")
if isinstance(values, pa.Array):
self._data = pa.chunked_array([values])
elif isinstance(values, pa.ChunkedArray):
self._data = values
else:
raise ValueError(f"Unsupported type '{type(values)}' for ArrowStringArray")
if not pa.types.is_string(self._data.type):
raise ValueError(
"ArrowStringArray requires a PyArrow (chunked) array of string type"
)
@classmethod
def _from_sequence(cls, scalars, dtype: Dtype | None = None, copy: bool = False):
from pandas.core.arrays.masked import BaseMaskedArray
_chk_pyarrow_available()
if dtype and not (isinstance(dtype, str) and dtype == "string"):
dtype = pandas_dtype(dtype)
assert isinstance(dtype, StringDtype) and dtype.storage == "pyarrow"
if isinstance(scalars, BaseMaskedArray):
# avoid costly conversion to object dtype in ensure_string_array and
# numerical issues with Float32Dtype
na_values = scalars._mask
result = scalars._data
result = lib.ensure_string_array(result, copy=copy, convert_na_value=False)
return cls(pa.array(result, mask=na_values, type=pa.string()))
# convert non-na-likes to str
result = lib.ensure_string_array(scalars, copy=copy)
return cls(pa.array(result, type=pa.string(), from_pandas=True))
@classmethod
def _from_sequence_of_strings(
cls, strings, dtype: Dtype | None = None, copy: bool = False
):
return cls._from_sequence(strings, dtype=dtype, copy=copy)
@property
def dtype(self) -> StringDtype:
"""
An instance of 'string[pyarrow]'.
"""
return self._dtype
def __array__(self, dtype: NpDtype | None = None) -> np.ndarray:
"""Correctly construct numpy arrays when passed to `np.asarray()`."""
return self.to_numpy(dtype=dtype)
def to_numpy(
self,
dtype: npt.DTypeLike | None = None,
copy: bool = False,
na_value=lib.no_default,
) -> np.ndarray:
"""
Convert to a NumPy ndarray.
"""
# TODO: copy argument is ignored
result = np.array(self._data, dtype=dtype)
if self._data.null_count > 0:
if na_value is lib.no_default:
if dtype and np.issubdtype(dtype, np.floating):
return result
na_value = self._dtype.na_value
mask = self.isna()
result[mask] = na_value
return result
@doc(ExtensionArray.factorize)
def factorize(self, na_sentinel: int = -1) -> tuple[np.ndarray, ExtensionArray]:
encoded = self._data.dictionary_encode()
indices = pa.chunked_array(
[c.indices for c in encoded.chunks], type=encoded.type.index_type
).to_pandas()
if indices.dtype.kind == "f":
indices[np.isnan(indices)] = na_sentinel
indices = indices.astype(np.int64, copy=False)
if encoded.num_chunks:
uniques = type(self)(encoded.chunk(0).dictionary)
else:
uniques = type(self)(pa.array([], type=encoded.type.value_type))
return indices.values, uniques
@overload
def __getitem__(self, item: ScalarIndexer) -> ArrowStringScalarOrNAT:
...
@overload
def __getitem__(self: ArrowStringArray, item: SequenceIndexer) -> ArrowStringArray:
...
def __getitem__(
self: ArrowStringArray, item: PositionalIndexer
) -> ArrowStringArray | ArrowStringScalarOrNAT:
"""Select a subset of self.
Parameters
----------
item : int, slice, or ndarray
* int: The position in 'self' to get.
* slice: A slice object, where 'start', 'stop', and 'step' are
integers or None
* ndarray: A 1-d boolean NumPy ndarray the same length as 'self'
Returns
-------
item : scalar or ExtensionArray
Notes
-----
For scalar ``item``, return a scalar value suitable for the array's
type. This should be an instance of ``self.dtype.type``.
For slice ``key``, return an instance of ``ExtensionArray``, even
if the slice is length 0 or 1.
For a boolean mask, return an instance of ``ExtensionArray``, filtered
to the values where ``item`` is True.
"""
item = check_array_indexer(self, item)
if isinstance(item, np.ndarray):
if not len(item):
return type(self)(pa.chunked_array([], type=pa.string()))
elif is_integer_dtype(item.dtype):
return self.take(item)
elif is_bool_dtype(item.dtype):
return type(self)(self._data.filter(item))
else:
raise IndexError(
"Only integers, slices and integer or "
"boolean arrays are valid indices."
)
elif isinstance(item, tuple):
item = unpack_tuple_and_ellipses(item)
# error: Non-overlapping identity check (left operand type:
# "Union[Union[int, integer[Any]], Union[slice, List[int],
# ndarray[Any, Any]]]", right operand type: "ellipsis")
if item is Ellipsis: # type: ignore[comparison-overlap]
# TODO: should be handled by pyarrow?
item = slice(None)
if is_scalar(item) and not is_integer(item):
# e.g. "foo" or 2.5
# exception message copied from numpy
raise IndexError(
r"only integers, slices (`:`), ellipsis (`...`), numpy.newaxis "
r"(`None`) and integer or boolean arrays are valid indices"
)
# We are not an array indexer, so maybe e.g. a slice or integer
# indexer. We dispatch to pyarrow.
value = self._data[item]
if isinstance(value, pa.ChunkedArray):
return type(self)(value)
else:
return self._as_pandas_scalar(value)
def _as_pandas_scalar(self, arrow_scalar: pa.Scalar):
scalar = arrow_scalar.as_py()
if scalar is None:
return self._dtype.na_value
else:
return scalar
def _cmp_method(self, other, op):
from pandas.arrays import BooleanArray
pc_func = ARROW_CMP_FUNCS[op.__name__]
if isinstance(other, ArrowStringArray):
result = pc_func(self._data, other._data)
elif isinstance(other, (np.ndarray, list)):
result = pc_func(self._data, other)
elif is_scalar(other):
try:
result = pc_func(self._data, pa.scalar(other))
except (pa.lib.ArrowNotImplementedError, pa.lib.ArrowInvalid):
mask = isna(self) | isna(other)
valid = ~mask
result = np.zeros(len(self), dtype="bool")
result[valid] = op(np.array(self)[valid], other)
return BooleanArray(result, mask)
else:
return NotImplemented
# TODO(ARROW-9429): Add a .to_numpy() to ChunkedArray
return BooleanArray._from_sequence(result.to_pandas().values)
def insert(self, loc: int, item):
if not isinstance(item, str) and item is not libmissing.NA:
raise TypeError("Scalar must be NA or str")
return super().insert(loc, item)
def __setitem__(self, key: int | slice | np.ndarray, value: Any) -> None:
"""Set one or more values inplace.
Parameters
----------
key : int, ndarray, or slice
When called from, e.g. ``Series.__setitem__``, ``key`` will be
one of
* scalar int
* ndarray of integers.
* boolean ndarray
* slice object
value : ExtensionDtype.type, Sequence[ExtensionDtype.type], or object
value or values to be set of ``key``.
Returns
-------
None
"""
key = check_array_indexer(self, key)
if is_integer(key):
key = cast(int, key)
if not is_scalar(value):
raise ValueError("Must pass scalars with scalar indexer")
elif isna(value):
value = None
elif not isinstance(value, str):
raise ValueError("Scalar must be NA or str")
# Slice data and insert in-between
new_data = [
*self._data[0:key].chunks,
pa.array([value], type=pa.string()),
*self._data[(key + 1) :].chunks,
]
self._data = pa.chunked_array(new_data)
else:
# Convert to integer indices and iteratively assign.
# TODO: Make a faster variant of this in Arrow upstream.
# This is probably extremely slow.
# Convert all possible input key types to an array of integers
if isinstance(key, slice):
key_array = np.array(range(len(self))[key])
elif is_bool_dtype(key):
# TODO(ARROW-9430): Directly support setitem(booleans)
key_array = np.argwhere(key).flatten()
else:
# TODO(ARROW-9431): Directly support setitem(integers)
key_array = np.asanyarray(key)
if is_scalar(value):
value = np.broadcast_to(value, len(key_array))
else:
value = np.asarray(value)
if len(key_array) != len(value):
raise ValueError("Length of indexer and values mismatch")
for k, v in zip(key_array, value):
self[k] = v
def take(
self,
indices: TakeIndexer,
allow_fill: bool = False,
fill_value: Any = None,
):
"""
Take elements from an array.
Parameters
----------
indices : sequence of int or one-dimensional np.ndarray of int
Indices to be taken.
allow_fill : bool, default False
How to handle negative values in `indices`.
* False: negative values in `indices` indicate positional indices
from the right (the default). This is similar to
:func:`numpy.take`.
* True: negative values in `indices` indicate
missing values. These values are set to `fill_value`. Any other
other negative values raise a ``ValueError``.
fill_value : any, optional
Fill value to use for NA-indices when `allow_fill` is True.
This may be ``None``, in which case the default NA value for
the type, ``self.dtype.na_value``, is used.
For many ExtensionArrays, there will be two representations of
`fill_value`: a user-facing "boxed" scalar, and a low-level
physical NA value. `fill_value` should be the user-facing version,
and the implementation should handle translating that to the
physical version for processing the take if necessary.
Returns
-------
ExtensionArray
Raises
------
IndexError
When the indices are out of bounds for the array.
ValueError
When `indices` contains negative values other than ``-1``
and `allow_fill` is True.
See Also
--------
numpy.take
api.extensions.take
Notes
-----
ExtensionArray.take is called by ``Series.__getitem__``, ``.loc``,
``iloc``, when `indices` is a sequence of values. Additionally,
it's called by :meth:`Series.reindex`, or any other method
that causes realignment, with a `fill_value`.
"""
# TODO: Remove once we got rid of the (indices < 0) check
if not is_array_like(indices):
indices_array = np.asanyarray(indices)
else:
# error: Incompatible types in assignment (expression has type
# "Sequence[int]", variable has type "ndarray")
indices_array = indices # type: ignore[assignment]
if len(self._data) == 0 and (indices_array >= 0).any():
raise IndexError("cannot do a non-empty take")
if indices_array.size > 0 and indices_array.max() >= len(self._data):
raise IndexError("out of bounds value in 'indices'.")
if allow_fill:
fill_mask = indices_array < 0
if fill_mask.any():
validate_indices(indices_array, len(self._data))
# TODO(ARROW-9433): Treat negative indices as NULL
indices_array = pa.array(indices_array, mask=fill_mask)
result = self._data.take(indices_array)
if isna(fill_value):
return type(self)(result)
# TODO: ArrowNotImplementedError: Function fill_null has no
# kernel matching input types (array[string], scalar[string])
result = type(self)(result)
result[fill_mask] = fill_value
return result
# return type(self)(pc.fill_null(result, pa.scalar(fill_value)))
else:
# Nothing to fill
return type(self)(self._data.take(indices))
else: # allow_fill=False
# TODO(ARROW-9432): Treat negative indices as indices from the right.
if (indices_array < 0).any():
# Don't modify in-place
indices_array = np.copy(indices_array)
indices_array[indices_array < 0] += len(self._data)
return type(self)(self._data.take(indices_array))
def isin(self, values):
if pa_version_under2p0:
return super().isin(values)
value_set = [
pa_scalar.as_py()
for pa_scalar in [pa.scalar(value, from_pandas=True) for value in values]
if pa_scalar.type in (pa.string(), pa.null())
]
# for an empty value_set pyarrow 3.0.0 segfaults and pyarrow 2.0.0 returns True
# for null values, so we short-circuit to return all False array.
if not len(value_set):
return np.zeros(len(self), dtype=bool)
kwargs = {}
if pa_version_under3p0:
# in pyarrow 2.0.0 skip_null is ignored but is a required keyword and raises
# with unexpected keyword argument in pyarrow 3.0.0+
kwargs["skip_null"] = True
result = pc.is_in(self._data, value_set=pa.array(value_set), **kwargs)
# pyarrow 2.0.0 returned nulls, so we explicily specify dtype to convert nulls
# to False
return np.array(result, dtype=np.bool_)
def value_counts(self, dropna: bool = True) -> Series:
"""
Return a Series containing counts of each unique value.
Parameters
----------
dropna : bool, default True
Don't include counts of missing values.
Returns
-------
counts : Series
See Also
--------
Series.value_counts
"""
from pandas import (
Index,
Series,
)
vc = self._data.value_counts()
values = vc.field(0)
counts = vc.field(1)
if dropna and self._data.null_count > 0:
mask = values.is_valid()
values = values.filter(mask)
counts = counts.filter(mask)
# No missing values so we can adhere to the interface and return a numpy array.
counts = np.array(counts)
index = Index(type(self)(values))
return Series(counts, index=index).astype("Int64")
def astype(self, dtype, copy: bool = True):
dtype = pandas_dtype(dtype)
if is_dtype_equal(dtype, self.dtype):
if copy:
return self.copy()
return self
elif isinstance(dtype, NumericDtype):
data = self._data.cast(pa.from_numpy_dtype(dtype.numpy_dtype))
return dtype.__from_arrow__(data)
return super().astype(dtype, copy=copy)
# ------------------------------------------------------------------------
# String methods interface
# error: Cannot determine type of 'na_value'
_str_na_value = StringDtype.na_value # type: ignore[has-type]
def _str_map(
self, f, na_value=None, dtype: Dtype | None = None, convert: bool = True
):
# TODO: de-duplicate with StringArray method. This method is moreless copy and
# paste.
from pandas.arrays import (
BooleanArray,
IntegerArray,
)
if dtype is None:
dtype = self.dtype
if na_value is None:
na_value = self.dtype.na_value
mask = isna(self)
arr = np.asarray(self)
if is_integer_dtype(dtype) or is_bool_dtype(dtype):
constructor: type[IntegerArray] | type[BooleanArray]
if is_integer_dtype(dtype):
constructor = IntegerArray
else:
constructor = BooleanArray
na_value_is_na = isna(na_value)
if na_value_is_na:
na_value = 1
result = lib.map_infer_mask(
arr,
f,
mask.view("uint8"),
convert=False,
na_value=na_value,
# error: Argument 1 to "dtype" has incompatible type
# "Union[ExtensionDtype, str, dtype[Any], Type[object]]"; expected
# "Type[object]"
dtype=np.dtype(dtype), # type: ignore[arg-type]
)
if not na_value_is_na:
mask[:] = False
return constructor(result, mask)
elif is_string_dtype(dtype) and not is_object_dtype(dtype):
# i.e. StringDtype
result = lib.map_infer_mask(
arr, f, mask.view("uint8"), convert=False, na_value=na_value
)
result = pa.array(result, mask=mask, type=pa.string(), from_pandas=True)
return type(self)(result)
else:
# This is when the result type is object. We reach this when
# -> We know the result type is truly object (e.g. .encode returns bytes
# or .findall returns a list).
# -> We don't know the result type. E.g. `.get` can return anything.
return lib.map_infer_mask(arr, f, mask.view("uint8"))
def _str_contains(self, pat, case=True, flags=0, na=np.nan, regex: bool = True):
if flags:
return super()._str_contains(pat, case, flags, na, regex)
if regex:
if pa_version_under4p0 or case is False:
return super()._str_contains(pat, case, flags, na, regex)
else:
result = pc.match_substring_regex(self._data, pat)
else:
if case:
result = pc.match_substring(self._data, pat)
else:
result = pc.match_substring(pc.utf8_upper(self._data), pat.upper())
result = BooleanDtype().__from_arrow__(result)
if not isna(na):
result[isna(result)] = bool(na)
return result
def _str_startswith(self, pat: str, na=None):
if pa_version_under4p0:
return super()._str_startswith(pat, na)
pat = "^" + re.escape(pat)
return self._str_contains(pat, na=na, regex=True)
def _str_endswith(self, pat: str, na=None):
if pa_version_under4p0:
return super()._str_endswith(pat, na)
pat = re.escape(pat) + "$"
return self._str_contains(pat, na=na, regex=True)
def _str_replace(
self,
pat: str | re.Pattern,
repl: str | Callable,
n: int = -1,
case: bool = True,
flags: int = 0,
regex: bool = True,
):
if (
pa_version_under4p0
or isinstance(pat, re.Pattern)
or callable(repl)
or not case
or flags
):
return super()._str_replace(pat, repl, n, case, flags, regex)
func = pc.replace_substring_regex if regex else pc.replace_substring
result = func(self._data, pattern=pat, replacement=repl, max_replacements=n)
return type(self)(result)
def _str_match(
self, pat: str, case: bool = True, flags: int = 0, na: Scalar | None = None
):
if pa_version_under4p0:
return super()._str_match(pat, case, flags, na)
if not pat.startswith("^"):
pat = "^" + pat
return self._str_contains(pat, case, flags, na, regex=True)
def _str_fullmatch(
self, pat, case: bool = True, flags: int = 0, na: Scalar | None = None
):
if pa_version_under4p0:
return super()._str_fullmatch(pat, case, flags, na)
if not pat.endswith("$") or pat.endswith("//$"):
pat = pat + "$"
return self._str_match(pat, case, flags, na)
def _str_isalnum(self):
result = pc.utf8_is_alnum(self._data)
return BooleanDtype().__from_arrow__(result)
def _str_isalpha(self):
result = pc.utf8_is_alpha(self._data)
return BooleanDtype().__from_arrow__(result)
def _str_isdecimal(self):
result = pc.utf8_is_decimal(self._data)
return BooleanDtype().__from_arrow__(result)
def _str_isdigit(self):
result = pc.utf8_is_digit(self._data)
return BooleanDtype().__from_arrow__(result)
def _str_islower(self):
result = pc.utf8_is_lower(self._data)
return BooleanDtype().__from_arrow__(result)
def _str_isnumeric(self):
result = pc.utf8_is_numeric(self._data)
return BooleanDtype().__from_arrow__(result)
def _str_isspace(self):
if pa_version_under2p0:
return super()._str_isspace()
result = pc.utf8_is_space(self._data)
return BooleanDtype().__from_arrow__(result)
def _str_istitle(self):
result = pc.utf8_is_title(self._data)
return BooleanDtype().__from_arrow__(result)
def _str_isupper(self):
result = pc.utf8_is_upper(self._data)
return BooleanDtype().__from_arrow__(result)
def _str_len(self):
if pa_version_under4p0:
return super()._str_len()
result = pc.utf8_length(self._data)
return Int64Dtype().__from_arrow__(result)
def _str_lower(self):
return type(self)(pc.utf8_lower(self._data))
def _str_upper(self):
return type(self)(pc.utf8_upper(self._data))
def _str_strip(self, to_strip=None):
if pa_version_under4p0:
return super()._str_strip(to_strip)
if to_strip is None:
result = pc.utf8_trim_whitespace(self._data)
else:
result = pc.utf8_trim(self._data, characters=to_strip)
return type(self)(result)
def _str_lstrip(self, to_strip=None):
if pa_version_under4p0:
return super()._str_lstrip(to_strip)
if to_strip is None:
result = pc.utf8_ltrim_whitespace(self._data)
else:
result = pc.utf8_ltrim(self._data, characters=to_strip)
return type(self)(result)
def _str_rstrip(self, to_strip=None):
if pa_version_under4p0:
return super()._str_rstrip(to_strip)
if to_strip is None:
result = pc.utf8_rtrim_whitespace(self._data)
else:
result = pc.utf8_rtrim(self._data, characters=to_strip)
return type(self)(result)