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test_reductions.py
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from datetime import timedelta
from decimal import Decimal
import re
from dateutil.tz import tzlocal
import numpy as np
import pytest
from pandas._config import using_pyarrow_string_dtype
from pandas.compat import (
IS64,
is_platform_windows,
)
from pandas.compat.numpy import np_version_gt2
import pandas.util._test_decorators as td
import pandas as pd
from pandas import (
Categorical,
CategoricalDtype,
DataFrame,
DatetimeIndex,
Index,
PeriodIndex,
RangeIndex,
Series,
Timestamp,
date_range,
isna,
notna,
to_datetime,
to_timedelta,
)
import pandas._testing as tm
from pandas.core import (
algorithms,
nanops,
)
is_windows_np2_or_is32 = (is_platform_windows() and not np_version_gt2) or not IS64
is_windows_or_is32 = is_platform_windows() or not IS64
def make_skipna_wrapper(alternative, skipna_alternative=None):
"""
Create a function for calling on an array.
Parameters
----------
alternative : function
The function to be called on the array with no NaNs.
Only used when 'skipna_alternative' is None.
skipna_alternative : function
The function to be called on the original array
Returns
-------
function
"""
if skipna_alternative:
def skipna_wrapper(x):
return skipna_alternative(x.values)
else:
def skipna_wrapper(x):
nona = x.dropna()
if len(nona) == 0:
return np.nan
return alternative(nona)
return skipna_wrapper
def assert_stat_op_calc(
opname,
alternative,
frame,
has_skipna=True,
check_dtype=True,
check_dates=False,
rtol=1e-5,
atol=1e-8,
skipna_alternative=None,
):
"""
Check that operator opname works as advertised on frame
Parameters
----------
opname : str
Name of the operator to test on frame
alternative : function
Function that opname is tested against; i.e. "frame.opname()" should
equal "alternative(frame)".
frame : DataFrame
The object that the tests are executed on
has_skipna : bool, default True
Whether the method "opname" has the kwarg "skip_na"
check_dtype : bool, default True
Whether the dtypes of the result of "frame.opname()" and
"alternative(frame)" should be checked.
check_dates : bool, default false
Whether opname should be tested on a Datetime Series
rtol : float, default 1e-5
Relative tolerance.
atol : float, default 1e-8
Absolute tolerance.
skipna_alternative : function, default None
NaN-safe version of alternative
"""
f = getattr(frame, opname)
if check_dates:
df = DataFrame({"b": date_range("1/1/2001", periods=2)})
with tm.assert_produces_warning(None):
result = getattr(df, opname)()
assert isinstance(result, Series)
df["a"] = range(len(df))
with tm.assert_produces_warning(None):
result = getattr(df, opname)()
assert isinstance(result, Series)
assert len(result)
if has_skipna:
def wrapper(x):
return alternative(x.values)
skipna_wrapper = make_skipna_wrapper(alternative, skipna_alternative)
result0 = f(axis=0, skipna=False)
result1 = f(axis=1, skipna=False)
tm.assert_series_equal(
result0, frame.apply(wrapper), check_dtype=check_dtype, rtol=rtol, atol=atol
)
tm.assert_series_equal(
result1,
frame.apply(wrapper, axis=1),
rtol=rtol,
atol=atol,
)
else:
skipna_wrapper = alternative
result0 = f(axis=0)
result1 = f(axis=1)
tm.assert_series_equal(
result0,
frame.apply(skipna_wrapper),
check_dtype=check_dtype,
rtol=rtol,
atol=atol,
)
if opname in ["sum", "prod"]:
expected = frame.apply(skipna_wrapper, axis=1)
tm.assert_series_equal(
result1, expected, check_dtype=False, rtol=rtol, atol=atol
)
# check dtypes
if check_dtype:
lcd_dtype = frame.values.dtype
assert lcd_dtype == result0.dtype
assert lcd_dtype == result1.dtype
# bad axis
with pytest.raises(ValueError, match="No axis named 2"):
f(axis=2)
# all NA case
if has_skipna:
all_na = frame * np.nan
r0 = getattr(all_na, opname)(axis=0)
r1 = getattr(all_na, opname)(axis=1)
if opname in ["sum", "prod"]:
unit = 1 if opname == "prod" else 0 # result for empty sum/prod
expected = Series(unit, index=r0.index, dtype=r0.dtype)
tm.assert_series_equal(r0, expected)
expected = Series(unit, index=r1.index, dtype=r1.dtype)
tm.assert_series_equal(r1, expected)
@pytest.fixture
def bool_frame_with_na():
"""
Fixture for DataFrame of booleans with index of unique strings
Columns are ['A', 'B', 'C', 'D']; some entries are missing
"""
df = DataFrame(
np.concatenate(
[np.ones((15, 4), dtype=bool), np.zeros((15, 4), dtype=bool)], axis=0
),
index=Index([f"foo_{i}" for i in range(30)], dtype=object),
columns=Index(list("ABCD"), dtype=object),
dtype=object,
)
# set some NAs
df.iloc[5:10] = np.nan
df.iloc[15:20, -2:] = np.nan
return df
@pytest.fixture
def float_frame_with_na():
"""
Fixture for DataFrame of floats with index of unique strings
Columns are ['A', 'B', 'C', 'D']; some entries are missing
"""
df = DataFrame(
np.random.default_rng(2).standard_normal((30, 4)),
index=Index([f"foo_{i}" for i in range(30)], dtype=object),
columns=Index(list("ABCD"), dtype=object),
)
# set some NAs
df.iloc[5:10] = np.nan
df.iloc[15:20, -2:] = np.nan
return df
class TestDataFrameAnalytics:
# ---------------------------------------------------------------------
# Reductions
@pytest.mark.parametrize("axis", [0, 1])
@pytest.mark.parametrize(
"opname",
[
"count",
"sum",
"mean",
"product",
"median",
"min",
"max",
"nunique",
"var",
"std",
"sem",
pytest.param("skew", marks=td.skip_if_no("scipy")),
pytest.param("kurt", marks=td.skip_if_no("scipy")),
],
)
def test_stat_op_api_float_string_frame(
self, float_string_frame, axis, opname, using_infer_string
):
if (
(opname in ("sum", "min", "max") and axis == 0)
or opname
in (
"count",
"nunique",
)
) and not (using_infer_string and opname == "sum"):
getattr(float_string_frame, opname)(axis=axis)
else:
if opname in ["var", "std", "sem", "skew", "kurt"]:
msg = "could not convert string to float: 'bar'"
elif opname == "product":
if axis == 1:
msg = "can't multiply sequence by non-int of type 'float'"
else:
msg = "can't multiply sequence by non-int of type 'str'"
elif opname == "sum":
msg = r"unsupported operand type\(s\) for \+: 'float' and 'str'"
elif opname == "mean":
if axis == 0:
# different message on different builds
msg = "|".join(
[
r"Could not convert \['.*'\] to numeric",
"Could not convert string '(bar){30}' to numeric",
]
)
else:
msg = r"unsupported operand type\(s\) for \+: 'float' and 'str'"
elif opname in ["min", "max"]:
msg = "'[><]=' not supported between instances of 'float' and 'str'"
elif opname == "median":
msg = re.compile(
r"Cannot convert \[.*\] to numeric|does not support", flags=re.S
)
if not isinstance(msg, re.Pattern):
msg = msg + "|does not support"
with pytest.raises(TypeError, match=msg):
getattr(float_string_frame, opname)(axis=axis)
if opname != "nunique":
getattr(float_string_frame, opname)(axis=axis, numeric_only=True)
@pytest.mark.parametrize("axis", [0, 1])
@pytest.mark.parametrize(
"opname",
[
"count",
"sum",
"mean",
"product",
"median",
"min",
"max",
"var",
"std",
"sem",
pytest.param("skew", marks=td.skip_if_no("scipy")),
pytest.param("kurt", marks=td.skip_if_no("scipy")),
],
)
def test_stat_op_api_float_frame(self, float_frame, axis, opname):
getattr(float_frame, opname)(axis=axis, numeric_only=False)
def test_stat_op_calc(self, float_frame_with_na, mixed_float_frame):
def count(s):
return notna(s).sum()
def nunique(s):
return len(algorithms.unique1d(s.dropna()))
def var(x):
return np.var(x, ddof=1)
def std(x):
return np.std(x, ddof=1)
def sem(x):
return np.std(x, ddof=1) / np.sqrt(len(x))
assert_stat_op_calc(
"nunique",
nunique,
float_frame_with_na,
has_skipna=False,
check_dtype=False,
check_dates=True,
)
# GH#32571: rol needed for flaky CI builds
# mixed types (with upcasting happening)
assert_stat_op_calc(
"sum",
np.sum,
mixed_float_frame.astype("float32"),
check_dtype=False,
rtol=1e-3,
)
assert_stat_op_calc(
"sum", np.sum, float_frame_with_na, skipna_alternative=np.nansum
)
assert_stat_op_calc("mean", np.mean, float_frame_with_na, check_dates=True)
assert_stat_op_calc(
"product", np.prod, float_frame_with_na, skipna_alternative=np.nanprod
)
assert_stat_op_calc("var", var, float_frame_with_na)
assert_stat_op_calc("std", std, float_frame_with_na)
assert_stat_op_calc("sem", sem, float_frame_with_na)
assert_stat_op_calc(
"count",
count,
float_frame_with_na,
has_skipna=False,
check_dtype=False,
check_dates=True,
)
def test_stat_op_calc_skew_kurtosis(self, float_frame_with_na):
sp_stats = pytest.importorskip("scipy.stats")
def skewness(x):
if len(x) < 3:
return np.nan
return sp_stats.skew(x, bias=False)
def kurt(x):
if len(x) < 4:
return np.nan
return sp_stats.kurtosis(x, bias=False)
assert_stat_op_calc("skew", skewness, float_frame_with_na)
assert_stat_op_calc("kurt", kurt, float_frame_with_na)
def test_median(self, float_frame_with_na, int_frame):
def wrapper(x):
if isna(x).any():
return np.nan
return np.median(x)
assert_stat_op_calc("median", wrapper, float_frame_with_na, check_dates=True)
assert_stat_op_calc(
"median", wrapper, int_frame, check_dtype=False, check_dates=True
)
@pytest.mark.parametrize(
"method", ["sum", "mean", "prod", "var", "std", "skew", "min", "max"]
)
@pytest.mark.parametrize(
"df",
[
DataFrame(
{
"a": [
-0.00049987540199591344,
-0.0016467257772919831,
0.00067695870775883013,
],
"b": [-0, -0, 0.0],
"c": [
0.00031111847529610595,
0.0014902627951905339,
-0.00094099200035979691,
],
},
index=["foo", "bar", "baz"],
dtype="O",
),
DataFrame({0: [np.nan, 2], 1: [np.nan, 3], 2: [np.nan, 4]}, dtype=object),
],
)
@pytest.mark.filterwarnings("ignore:Mismatched null-like values:FutureWarning")
def test_stat_operators_attempt_obj_array(self, method, df, axis):
# GH#676
assert df.values.dtype == np.object_
result = getattr(df, method)(axis=axis)
expected = getattr(df.astype("f8"), method)(axis=axis).astype(object)
if axis in [1, "columns"] and method in ["min", "max"]:
expected[expected.isna()] = None
tm.assert_series_equal(result, expected)
@pytest.mark.parametrize("op", ["mean", "std", "var", "skew", "kurt", "sem"])
def test_mixed_ops(self, op):
# GH#16116
df = DataFrame(
{
"int": [1, 2, 3, 4],
"float": [1.0, 2.0, 3.0, 4.0],
"str": ["a", "b", "c", "d"],
}
)
msg = "|".join(
[
"Could not convert",
"could not convert",
"can't multiply sequence by non-int",
"does not support",
]
)
with pytest.raises(TypeError, match=msg):
getattr(df, op)()
with pd.option_context("use_bottleneck", False):
msg = "|".join(
[
"Could not convert",
"could not convert",
"can't multiply sequence by non-int",
"does not support",
]
)
with pytest.raises(TypeError, match=msg):
getattr(df, op)()
@pytest.mark.xfail(
using_pyarrow_string_dtype(), reason="sum doesn't work for arrow strings"
)
def test_reduce_mixed_frame(self):
# GH 6806
df = DataFrame(
{
"bool_data": [True, True, False, False, False],
"int_data": [10, 20, 30, 40, 50],
"string_data": ["a", "b", "c", "d", "e"],
}
)
df.reindex(columns=["bool_data", "int_data", "string_data"])
test = df.sum(axis=0)
tm.assert_numpy_array_equal(
test.values, np.array([2, 150, "abcde"], dtype=object)
)
alt = df.T.sum(axis=1)
tm.assert_series_equal(test, alt)
def test_nunique(self):
df = DataFrame({"A": [1, 1, 1], "B": [1, 2, 3], "C": [1, np.nan, 3]})
tm.assert_series_equal(df.nunique(), Series({"A": 1, "B": 3, "C": 2}))
tm.assert_series_equal(
df.nunique(dropna=False), Series({"A": 1, "B": 3, "C": 3})
)
tm.assert_series_equal(df.nunique(axis=1), Series({0: 1, 1: 2, 2: 2}))
tm.assert_series_equal(
df.nunique(axis=1, dropna=False), Series({0: 1, 1: 3, 2: 2})
)
@pytest.mark.parametrize("tz", [None, "UTC"])
def test_mean_mixed_datetime_numeric(self, tz):
# https://github.com/pandas-dev/pandas/issues/24752
df = DataFrame({"A": [1, 1], "B": [Timestamp("2000", tz=tz)] * 2})
result = df.mean()
expected = Series([1.0, Timestamp("2000", tz=tz)], index=["A", "B"])
tm.assert_series_equal(result, expected)
@pytest.mark.parametrize("tz", [None, "UTC"])
def test_mean_includes_datetimes(self, tz):
# https://github.com/pandas-dev/pandas/issues/24752
# Behavior in 0.24.0rc1 was buggy.
# As of 2.0 with numeric_only=None we do *not* drop datetime columns
df = DataFrame({"A": [Timestamp("2000", tz=tz)] * 2})
result = df.mean()
expected = Series([Timestamp("2000", tz=tz)], index=["A"])
tm.assert_series_equal(result, expected)
def test_mean_mixed_string_decimal(self):
# GH 11670
# possible bug when calculating mean of DataFrame?
d = [
{"A": 2, "B": None, "C": Decimal("628.00")},
{"A": 1, "B": None, "C": Decimal("383.00")},
{"A": 3, "B": None, "C": Decimal("651.00")},
{"A": 2, "B": None, "C": Decimal("575.00")},
{"A": 4, "B": None, "C": Decimal("1114.00")},
{"A": 1, "B": "TEST", "C": Decimal("241.00")},
{"A": 2, "B": None, "C": Decimal("572.00")},
{"A": 4, "B": None, "C": Decimal("609.00")},
{"A": 3, "B": None, "C": Decimal("820.00")},
{"A": 5, "B": None, "C": Decimal("1223.00")},
]
df = DataFrame(d)
with pytest.raises(
TypeError, match="unsupported operand type|does not support"
):
df.mean()
result = df[["A", "C"]].mean()
expected = Series([2.7, 681.6], index=["A", "C"], dtype=object)
tm.assert_series_equal(result, expected)
def test_var_std(self, datetime_frame):
result = datetime_frame.std(ddof=4)
expected = datetime_frame.apply(lambda x: x.std(ddof=4))
tm.assert_almost_equal(result, expected)
result = datetime_frame.var(ddof=4)
expected = datetime_frame.apply(lambda x: x.var(ddof=4))
tm.assert_almost_equal(result, expected)
arr = np.repeat(np.random.default_rng(2).random((1, 1000)), 1000, 0)
result = nanops.nanvar(arr, axis=0)
assert not (result < 0).any()
with pd.option_context("use_bottleneck", False):
result = nanops.nanvar(arr, axis=0)
assert not (result < 0).any()
@pytest.mark.parametrize("meth", ["sem", "var", "std"])
def test_numeric_only_flag(self, meth):
# GH 9201
df1 = DataFrame(
np.random.default_rng(2).standard_normal((5, 3)),
columns=["foo", "bar", "baz"],
)
# Cast to object to avoid implicit cast when setting entry to "100" below
df1 = df1.astype({"foo": object})
# set one entry to a number in str format
df1.loc[0, "foo"] = "100"
df2 = DataFrame(
np.random.default_rng(2).standard_normal((5, 3)),
columns=["foo", "bar", "baz"],
)
# Cast to object to avoid implicit cast when setting entry to "a" below
df2 = df2.astype({"foo": object})
# set one entry to a non-number str
df2.loc[0, "foo"] = "a"
result = getattr(df1, meth)(axis=1, numeric_only=True)
expected = getattr(df1[["bar", "baz"]], meth)(axis=1)
tm.assert_series_equal(expected, result)
result = getattr(df2, meth)(axis=1, numeric_only=True)
expected = getattr(df2[["bar", "baz"]], meth)(axis=1)
tm.assert_series_equal(expected, result)
# df1 has all numbers, df2 has a letter inside
msg = r"unsupported operand type\(s\) for -: 'float' and 'str'"
with pytest.raises(TypeError, match=msg):
getattr(df1, meth)(axis=1, numeric_only=False)
msg = "could not convert string to float: 'a'"
with pytest.raises(TypeError, match=msg):
getattr(df2, meth)(axis=1, numeric_only=False)
def test_sem(self, datetime_frame):
result = datetime_frame.sem(ddof=4)
expected = datetime_frame.apply(lambda x: x.std(ddof=4) / np.sqrt(len(x)))
tm.assert_almost_equal(result, expected)
arr = np.repeat(np.random.default_rng(2).random((1, 1000)), 1000, 0)
result = nanops.nansem(arr, axis=0)
assert not (result < 0).any()
with pd.option_context("use_bottleneck", False):
result = nanops.nansem(arr, axis=0)
assert not (result < 0).any()
@pytest.mark.parametrize(
"dropna, expected",
[
(
True,
{
"A": [12],
"B": [10.0],
"C": [1.0],
"D": ["a"],
"E": Categorical(["a"], categories=["a"]),
"F": DatetimeIndex(["2000-01-02"], dtype="M8[ns]"),
"G": to_timedelta(["1 days"]),
},
),
(
False,
{
"A": [12],
"B": [10.0],
"C": [np.nan],
"D": np.array([np.nan], dtype=object),
"E": Categorical([np.nan], categories=["a"]),
"F": DatetimeIndex([pd.NaT], dtype="M8[ns]"),
"G": to_timedelta([pd.NaT]),
},
),
(
True,
{
"H": [8, 9, np.nan, np.nan],
"I": [8, 9, np.nan, np.nan],
"J": [1, np.nan, np.nan, np.nan],
"K": Categorical(["a", np.nan, np.nan, np.nan], categories=["a"]),
"L": DatetimeIndex(
["2000-01-02", "NaT", "NaT", "NaT"], dtype="M8[ns]"
),
"M": to_timedelta(["1 days", "nan", "nan", "nan"]),
"N": [0, 1, 2, 3],
},
),
(
False,
{
"H": [8, 9, np.nan, np.nan],
"I": [8, 9, np.nan, np.nan],
"J": [1, np.nan, np.nan, np.nan],
"K": Categorical([np.nan, "a", np.nan, np.nan], categories=["a"]),
"L": DatetimeIndex(
["NaT", "2000-01-02", "NaT", "NaT"], dtype="M8[ns]"
),
"M": to_timedelta(["nan", "1 days", "nan", "nan"]),
"N": [0, 1, 2, 3],
},
),
],
)
def test_mode_dropna(self, dropna, expected):
df = DataFrame(
{
"A": [12, 12, 19, 11],
"B": [10, 10, np.nan, 3],
"C": [1, np.nan, np.nan, np.nan],
"D": Series([np.nan, np.nan, "a", np.nan], dtype=object),
"E": Categorical([np.nan, np.nan, "a", np.nan]),
"F": DatetimeIndex(["NaT", "2000-01-02", "NaT", "NaT"], dtype="M8[ns]"),
"G": to_timedelta(["1 days", "nan", "nan", "nan"]),
"H": [8, 8, 9, 9],
"I": [9, 9, 8, 8],
"J": [1, 1, np.nan, np.nan],
"K": Categorical(["a", np.nan, "a", np.nan]),
"L": DatetimeIndex(
["2000-01-02", "2000-01-02", "NaT", "NaT"], dtype="M8[ns]"
),
"M": to_timedelta(["1 days", "nan", "1 days", "nan"]),
"N": np.arange(4, dtype="int64"),
}
)
result = df[sorted(expected.keys())].mode(dropna=dropna)
expected = DataFrame(expected)
tm.assert_frame_equal(result, expected)
def test_mode_sortwarning(self, using_infer_string):
# Check for the warning that is raised when the mode
# results cannot be sorted
df = DataFrame({"A": [np.nan, np.nan, "a", "a"]})
expected = DataFrame({"A": ["a", np.nan]})
warning = None if using_infer_string else UserWarning
with tm.assert_produces_warning(warning):
result = df.mode(dropna=False)
result = result.sort_values(by="A").reset_index(drop=True)
tm.assert_frame_equal(result, expected)
def test_mode_empty_df(self):
df = DataFrame([], columns=["a", "b"])
result = df.mode()
expected = DataFrame([], columns=["a", "b"], index=Index([], dtype=np.int64))
tm.assert_frame_equal(result, expected)
def test_operators_timedelta64(self):
df = DataFrame(
{
"A": date_range("2012-1-1", periods=3, freq="D"),
"B": date_range("2012-1-2", periods=3, freq="D"),
"C": Timestamp("20120101") - timedelta(minutes=5, seconds=5),
}
)
diffs = DataFrame({"A": df["A"] - df["C"], "B": df["A"] - df["B"]})
# min
result = diffs.min()
assert result.iloc[0] == diffs.loc[0, "A"]
assert result.iloc[1] == diffs.loc[0, "B"]
result = diffs.min(axis=1)
assert (result == diffs.loc[0, "B"]).all()
# max
result = diffs.max()
assert result.iloc[0] == diffs.loc[2, "A"]
assert result.iloc[1] == diffs.loc[2, "B"]
result = diffs.max(axis=1)
assert (result == diffs["A"]).all()
# abs
result = diffs.abs()
result2 = abs(diffs)
expected = DataFrame({"A": df["A"] - df["C"], "B": df["B"] - df["A"]})
tm.assert_frame_equal(result, expected)
tm.assert_frame_equal(result2, expected)
# mixed frame
mixed = diffs.copy()
mixed["C"] = "foo"
mixed["D"] = 1
mixed["E"] = 1.0
mixed["F"] = Timestamp("20130101")
# results in an object array
result = mixed.min()
expected = Series(
[
pd.Timedelta(timedelta(seconds=5 * 60 + 5)),
pd.Timedelta(timedelta(days=-1)),
"foo",
1,
1.0,
Timestamp("20130101"),
],
index=mixed.columns,
)
tm.assert_series_equal(result, expected)
# excludes non-numeric
result = mixed.min(axis=1, numeric_only=True)
expected = Series([1, 1, 1.0], index=[0, 1, 2])
tm.assert_series_equal(result, expected)
# works when only those columns are selected
result = mixed[["A", "B"]].min(1)
expected = Series([timedelta(days=-1)] * 3)
tm.assert_series_equal(result, expected)
result = mixed[["A", "B"]].min()
expected = Series(
[timedelta(seconds=5 * 60 + 5), timedelta(days=-1)], index=["A", "B"]
)
tm.assert_series_equal(result, expected)
# GH 3106
df = DataFrame(
{
"time": date_range("20130102", periods=5),
"time2": date_range("20130105", periods=5),
}
)
df["off1"] = df["time2"] - df["time"]
assert df["off1"].dtype == "timedelta64[ns]"
df["off2"] = df["time"] - df["time2"]
df._consolidate_inplace()
assert df["off1"].dtype == "timedelta64[ns]"
assert df["off2"].dtype == "timedelta64[ns]"
def test_std_timedelta64_skipna_false(self):
# GH#37392
tdi = pd.timedelta_range("1 Day", periods=10)
df = DataFrame({"A": tdi, "B": tdi}, copy=True)
df.iloc[-2, -1] = pd.NaT
result = df.std(skipna=False)
expected = Series(
[df["A"].std(), pd.NaT], index=["A", "B"], dtype="timedelta64[ns]"
)
tm.assert_series_equal(result, expected)
result = df.std(axis=1, skipna=False)
expected = Series([pd.Timedelta(0)] * 8 + [pd.NaT, pd.Timedelta(0)])
tm.assert_series_equal(result, expected)
@pytest.mark.parametrize(
"values", [["2022-01-01", "2022-01-02", pd.NaT, "2022-01-03"], 4 * [pd.NaT]]
)
def test_std_datetime64_with_nat(self, values, skipna, request, unit):
# GH#51335
dti = to_datetime(values).as_unit(unit)
df = DataFrame({"a": dti})
result = df.std(skipna=skipna)
if not skipna or all(value is pd.NaT for value in values):
expected = Series({"a": pd.NaT}, dtype=f"timedelta64[{unit}]")
else:
# 86400000000000ns == 1 day
expected = Series({"a": 86400000000000}, dtype=f"timedelta64[{unit}]")
tm.assert_series_equal(result, expected)
def test_sum_corner(self):
empty_frame = DataFrame()
axis0 = empty_frame.sum(0)
axis1 = empty_frame.sum(1)
assert isinstance(axis0, Series)
assert isinstance(axis1, Series)
assert len(axis0) == 0
assert len(axis1) == 0
@pytest.mark.parametrize(
"index",
[
RangeIndex(0),
DatetimeIndex([]),
Index([], dtype=np.int64),
Index([], dtype=np.float64),
DatetimeIndex([], freq="ME"),
PeriodIndex([], freq="D"),
],
)
def test_axis_1_empty(self, all_reductions, index):
df = DataFrame(columns=["a"], index=index)
result = getattr(df, all_reductions)(axis=1)
if all_reductions in ("any", "all"):
expected_dtype = "bool"
elif all_reductions == "count":
expected_dtype = "int64"
else:
expected_dtype = "object"
expected = Series([], index=index, dtype=expected_dtype)
tm.assert_series_equal(result, expected)
@pytest.mark.parametrize("method, unit", [("sum", 0), ("prod", 1)])
@pytest.mark.parametrize("numeric_only", [None, True, False])
def test_sum_prod_nanops(self, method, unit, numeric_only):
idx = ["a", "b", "c"]
df = DataFrame({"a": [unit, unit], "b": [unit, np.nan], "c": [np.nan, np.nan]})
# The default
result = getattr(df, method)(numeric_only=numeric_only)
expected = Series([unit, unit, unit], index=idx, dtype="float64")
tm.assert_series_equal(result, expected)
# min_count=1
result = getattr(df, method)(numeric_only=numeric_only, min_count=1)
expected = Series([unit, unit, np.nan], index=idx)
tm.assert_series_equal(result, expected)
# min_count=0
result = getattr(df, method)(numeric_only=numeric_only, min_count=0)
expected = Series([unit, unit, unit], index=idx, dtype="float64")
tm.assert_series_equal(result, expected)
result = getattr(df.iloc[1:], method)(numeric_only=numeric_only, min_count=1)
expected = Series([unit, np.nan, np.nan], index=idx)
tm.assert_series_equal(result, expected)
# min_count > 1
df = DataFrame({"A": [unit] * 10, "B": [unit] * 5 + [np.nan] * 5})
result = getattr(df, method)(numeric_only=numeric_only, min_count=5)
expected = Series(result, index=["A", "B"])
tm.assert_series_equal(result, expected)
result = getattr(df, method)(numeric_only=numeric_only, min_count=6)
expected = Series(result, index=["A", "B"])
tm.assert_series_equal(result, expected)
def test_sum_nanops_timedelta(self):
# prod isn't defined on timedeltas
idx = ["a", "b", "c"]
df = DataFrame({"a": [0, 0], "b": [0, np.nan], "c": [np.nan, np.nan]})
df2 = df.apply(to_timedelta)
# 0 by default
result = df2.sum()
expected = Series([0, 0, 0], dtype="m8[ns]", index=idx)
tm.assert_series_equal(result, expected)
# min_count=0
result = df2.sum(min_count=0)
tm.assert_series_equal(result, expected)
# min_count=1
result = df2.sum(min_count=1)
expected = Series([0, 0, np.nan], dtype="m8[ns]", index=idx)
tm.assert_series_equal(result, expected)
def test_sum_nanops_min_count(self):
# https://github.com/pandas-dev/pandas/issues/39738
df = DataFrame({"x": [1, 2, 3], "y": [4, 5, 6]})
result = df.sum(min_count=10)
expected = Series([np.nan, np.nan], index=["x", "y"])
tm.assert_series_equal(result, expected)
@pytest.mark.parametrize("float_type", ["float16", "float32", "float64"])
@pytest.mark.parametrize(
"kwargs, expected_result",
[
({"axis": 1, "min_count": 2}, [3.2, 5.3, np.nan]),
({"axis": 1, "min_count": 3}, [np.nan, np.nan, np.nan]),
({"axis": 1, "skipna": False}, [3.2, 5.3, np.nan]),
],
)
def test_sum_nanops_dtype_min_count(self, float_type, kwargs, expected_result):
# GH#46947
df = DataFrame({"a": [1.0, 2.3, 4.4], "b": [2.2, 3, np.nan]}, dtype=float_type)
result = df.sum(**kwargs)
expected = Series(expected_result).astype(float_type)
tm.assert_series_equal(result, expected)
@pytest.mark.parametrize("float_type", ["float16", "float32", "float64"])
@pytest.mark.parametrize(
"kwargs, expected_result",
[
({"axis": 1, "min_count": 2}, [2.0, 4.0, np.nan]),
({"axis": 1, "min_count": 3}, [np.nan, np.nan, np.nan]),
({"axis": 1, "skipna": False}, [2.0, 4.0, np.nan]),
],
)
def test_prod_nanops_dtype_min_count(self, float_type, kwargs, expected_result):
# GH#46947
df = DataFrame(
{"a": [1.0, 2.0, 4.4], "b": [2.0, 2.0, np.nan]}, dtype=float_type
)
result = df.prod(**kwargs)
expected = Series(expected_result).astype(float_type)
tm.assert_series_equal(result, expected)
def test_sum_object(self, float_frame):
values = float_frame.values.astype(int)
frame = DataFrame(values, index=float_frame.index, columns=float_frame.columns)
deltas = frame * timedelta(1)
deltas.sum()
def test_sum_bool(self, float_frame):
# ensure this works, bug report
bools = np.isnan(float_frame)
bools.sum(1)
bools.sum(0)
def test_sum_mixed_datetime(self):
# GH#30886
df = DataFrame({"A": date_range("2000", periods=4), "B": [1, 2, 3, 4]}).reindex(
[2, 3, 4]
)
with pytest.raises(TypeError, match="does not support reduction 'sum'"):
df.sum()
def test_mean_corner(self, float_frame, float_string_frame):
# unit test when have object data
msg = "Could not convert|does not support"
with pytest.raises(TypeError, match=msg):
float_string_frame.mean(axis=0)
# xs sum mixed type, just want to know it works...
with pytest.raises(TypeError, match="unsupported operand type"):
float_string_frame.mean(axis=1)
# take mean of boolean column
float_frame["bool"] = float_frame["A"] > 0
means = float_frame.mean(0)
assert means["bool"] == float_frame["bool"].values.mean()
def test_mean_datetimelike(self):
# GH#24757 check that datetimelike are excluded by default, handled
# correctly with numeric_only=True
# As of 2.0, datetimelike are *not* excluded with numeric_only=None