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algorithms.py
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"""
Generic data algorithms. This module is experimental at the moment and not
intended for public consumption
"""
from __future__ import annotations
import inspect
import operator
from textwrap import dedent
from typing import (
TYPE_CHECKING,
Hashable,
Literal,
Sequence,
cast,
final,
)
import warnings
import numpy as np
from pandas._libs import (
algos,
hashtable as htable,
iNaT,
lib,
)
from pandas._typing import (
AnyArrayLike,
ArrayLike,
AxisInt,
DtypeObj,
IndexLabel,
TakeIndexer,
npt,
)
from pandas.util._decorators import doc
from pandas.util._exceptions import find_stack_level
from pandas.core.dtypes.cast import (
construct_1d_object_array_from_listlike,
infer_dtype_from_array,
sanitize_to_nanoseconds,
)
from pandas.core.dtypes.common import (
ensure_float64,
ensure_object,
ensure_platform_int,
is_array_like,
is_bool_dtype,
is_categorical_dtype,
is_complex_dtype,
is_datetime64_dtype,
is_extension_array_dtype,
is_float_dtype,
is_integer,
is_integer_dtype,
is_list_like,
is_numeric_dtype,
is_object_dtype,
is_scalar,
is_signed_integer_dtype,
is_timedelta64_dtype,
needs_i8_conversion,
)
from pandas.core.dtypes.concat import concat_compat
from pandas.core.dtypes.dtypes import (
BaseMaskedDtype,
ExtensionDtype,
PandasDtype,
)
from pandas.core.dtypes.generic import (
ABCDatetimeArray,
ABCExtensionArray,
ABCIndex,
ABCMultiIndex,
ABCRangeIndex,
ABCSeries,
ABCTimedeltaArray,
)
from pandas.core.dtypes.missing import (
isna,
na_value_for_dtype,
)
from pandas.core.array_algos.take import take_nd
from pandas.core.construction import (
array as pd_array,
ensure_wrapped_if_datetimelike,
extract_array,
)
from pandas.core.indexers import validate_indices
if TYPE_CHECKING:
from pandas._typing import (
NumpySorter,
NumpyValueArrayLike,
)
from pandas import (
Categorical,
DataFrame,
Index,
MultiIndex,
Series,
)
from pandas.core.arrays import (
BaseMaskedArray,
ExtensionArray,
)
# --------------- #
# dtype access #
# --------------- #
def _ensure_data(values: ArrayLike) -> np.ndarray:
"""
routine to ensure that our data is of the correct
input dtype for lower-level routines
This will coerce:
- ints -> int64
- uint -> uint64
- bool -> uint8
- datetimelike -> i8
- datetime64tz -> i8 (in local tz)
- categorical -> codes
Parameters
----------
values : np.ndarray or ExtensionArray
Returns
-------
np.ndarray
"""
if not isinstance(values, ABCMultiIndex):
# extract_array would raise
values = extract_array(values, extract_numpy=True)
if is_object_dtype(values.dtype):
return ensure_object(np.asarray(values))
elif isinstance(values.dtype, BaseMaskedDtype):
# i.e. BooleanArray, FloatingArray, IntegerArray
values = cast("BaseMaskedArray", values)
if not values._hasna:
# No pd.NAs -> We can avoid an object-dtype cast (and copy) GH#41816
# recurse to avoid re-implementing logic for eg bool->uint8
return _ensure_data(values._data)
return np.asarray(values)
elif is_categorical_dtype(values.dtype):
# NB: cases that go through here should NOT be using _reconstruct_data
# on the back-end.
values = cast("Categorical", values)
return values.codes
elif is_bool_dtype(values.dtype):
if isinstance(values, np.ndarray):
# i.e. actually dtype == np.dtype("bool")
return np.asarray(values).view("uint8")
else:
# e.g. Sparse[bool, False] # TODO: no test cases get here
return np.asarray(values).astype("uint8", copy=False)
elif is_integer_dtype(values.dtype):
return np.asarray(values)
elif is_float_dtype(values.dtype):
# Note: checking `values.dtype == "float128"` raises on Windows and 32bit
# error: Item "ExtensionDtype" of "Union[Any, ExtensionDtype, dtype[Any]]"
# has no attribute "itemsize"
if values.dtype.itemsize in [2, 12, 16]: # type: ignore[union-attr]
# we dont (yet) have float128 hashtable support
return ensure_float64(values)
return np.asarray(values)
elif is_complex_dtype(values.dtype):
return cast(np.ndarray, values)
# datetimelike
elif needs_i8_conversion(values.dtype):
if isinstance(values, np.ndarray):
values = sanitize_to_nanoseconds(values)
npvalues = values.view("i8")
npvalues = cast(np.ndarray, npvalues)
return npvalues
# we have failed, return object
values = np.asarray(values, dtype=object)
return ensure_object(values)
def _reconstruct_data(
values: ArrayLike, dtype: DtypeObj, original: AnyArrayLike
) -> ArrayLike:
"""
reverse of _ensure_data
Parameters
----------
values : np.ndarray or ExtensionArray
dtype : np.dtype or ExtensionDtype
original : AnyArrayLike
Returns
-------
ExtensionArray or np.ndarray
"""
if isinstance(values, ABCExtensionArray) and values.dtype == dtype:
# Catch DatetimeArray/TimedeltaArray
return values
if not isinstance(dtype, np.dtype):
# i.e. ExtensionDtype; note we have ruled out above the possibility
# that values.dtype == dtype
cls = dtype.construct_array_type()
values = cls._from_sequence(values, dtype=dtype)
else:
if is_datetime64_dtype(dtype):
dtype = np.dtype("datetime64[ns]")
elif is_timedelta64_dtype(dtype):
dtype = np.dtype("timedelta64[ns]")
values = values.astype(dtype, copy=False)
return values
def _ensure_arraylike(values) -> ArrayLike:
"""
ensure that we are arraylike if not already
"""
if not is_array_like(values):
inferred = lib.infer_dtype(values, skipna=False)
if inferred in ["mixed", "string", "mixed-integer"]:
# "mixed-integer" to ensure we do not cast ["ss", 42] to str GH#22160
if isinstance(values, tuple):
values = list(values)
values = construct_1d_object_array_from_listlike(values)
else:
values = np.asarray(values)
return values
_hashtables = {
"complex128": htable.Complex128HashTable,
"complex64": htable.Complex64HashTable,
"float64": htable.Float64HashTable,
"float32": htable.Float32HashTable,
"uint64": htable.UInt64HashTable,
"uint32": htable.UInt32HashTable,
"uint16": htable.UInt16HashTable,
"uint8": htable.UInt8HashTable,
"int64": htable.Int64HashTable,
"int32": htable.Int32HashTable,
"int16": htable.Int16HashTable,
"int8": htable.Int8HashTable,
"string": htable.StringHashTable,
"object": htable.PyObjectHashTable,
}
def _get_hashtable_algo(values: np.ndarray):
"""
Parameters
----------
values : np.ndarray
Returns
-------
htable : HashTable subclass
values : ndarray
"""
values = _ensure_data(values)
ndtype = _check_object_for_strings(values)
htable = _hashtables[ndtype]
return htable, values
def _check_object_for_strings(values: np.ndarray) -> str:
"""
Check if we can use string hashtable instead of object hashtable.
Parameters
----------
values : ndarray
Returns
-------
str
"""
ndtype = values.dtype.name
if ndtype == "object":
# it's cheaper to use a String Hash Table than Object; we infer
# including nulls because that is the only difference between
# StringHashTable and ObjectHashtable
if lib.infer_dtype(values, skipna=False) in ["string"]:
ndtype = "string"
return ndtype
# --------------- #
# top-level algos #
# --------------- #
def unique(values):
"""
Return unique values based on a hash table.
Uniques are returned in order of appearance. This does NOT sort.
Significantly faster than numpy.unique for long enough sequences.
Includes NA values.
Parameters
----------
values : 1d array-like
Returns
-------
numpy.ndarray or ExtensionArray
The return can be:
* Index : when the input is an Index
* Categorical : when the input is a Categorical dtype
* ndarray : when the input is a Series/ndarray
Return numpy.ndarray or ExtensionArray.
See Also
--------
Index.unique : Return unique values from an Index.
Series.unique : Return unique values of Series object.
Examples
--------
>>> pd.unique(pd.Series([2, 1, 3, 3]))
array([2, 1, 3])
>>> pd.unique(pd.Series([2] + [1] * 5))
array([2, 1])
>>> pd.unique(pd.Series([pd.Timestamp("20160101"), pd.Timestamp("20160101")]))
array(['2016-01-01T00:00:00.000000000'], dtype='datetime64[ns]')
>>> pd.unique(
... pd.Series(
... [
... pd.Timestamp("20160101", tz="US/Eastern"),
... pd.Timestamp("20160101", tz="US/Eastern"),
... ]
... )
... )
<DatetimeArray>
['2016-01-01 00:00:00-05:00']
Length: 1, dtype: datetime64[ns, US/Eastern]
>>> pd.unique(
... pd.Index(
... [
... pd.Timestamp("20160101", tz="US/Eastern"),
... pd.Timestamp("20160101", tz="US/Eastern"),
... ]
... )
... )
DatetimeIndex(['2016-01-01 00:00:00-05:00'],
dtype='datetime64[ns, US/Eastern]',
freq=None)
>>> pd.unique(list("baabc"))
array(['b', 'a', 'c'], dtype=object)
An unordered Categorical will return categories in the
order of appearance.
>>> pd.unique(pd.Series(pd.Categorical(list("baabc"))))
['b', 'a', 'c']
Categories (3, object): ['a', 'b', 'c']
>>> pd.unique(pd.Series(pd.Categorical(list("baabc"), categories=list("abc"))))
['b', 'a', 'c']
Categories (3, object): ['a', 'b', 'c']
An ordered Categorical preserves the category ordering.
>>> pd.unique(
... pd.Series(
... pd.Categorical(list("baabc"), categories=list("abc"), ordered=True)
... )
... )
['b', 'a', 'c']
Categories (3, object): ['a' < 'b' < 'c']
An array of tuples
>>> pd.unique([("a", "b"), ("b", "a"), ("a", "c"), ("b", "a")])
array([('a', 'b'), ('b', 'a'), ('a', 'c')], dtype=object)
"""
return unique_with_mask(values)
def unique_with_mask(values, mask: npt.NDArray[np.bool_] | None = None):
"""See algorithms.unique for docs. Takes a mask for masked arrays."""
values = _ensure_arraylike(values)
if is_extension_array_dtype(values.dtype):
# Dispatch to extension dtype's unique.
return values.unique()
original = values
htable, values = _get_hashtable_algo(values)
table = htable(len(values))
if mask is None:
uniques = table.unique(values)
uniques = _reconstruct_data(uniques, original.dtype, original)
return uniques
else:
uniques, mask = table.unique(values, mask=mask)
uniques = _reconstruct_data(uniques, original.dtype, original)
assert mask is not None # for mypy
return uniques, mask.astype("bool")
unique1d = unique
def isin(comps: AnyArrayLike, values: AnyArrayLike) -> npt.NDArray[np.bool_]:
"""
Compute the isin boolean array.
Parameters
----------
comps : array-like
values : array-like
Returns
-------
ndarray[bool]
Same length as `comps`.
"""
if not is_list_like(comps):
raise TypeError(
"only list-like objects are allowed to be passed "
f"to isin(), you passed a [{type(comps).__name__}]"
)
if not is_list_like(values):
raise TypeError(
"only list-like objects are allowed to be passed "
f"to isin(), you passed a [{type(values).__name__}]"
)
if not isinstance(values, (ABCIndex, ABCSeries, ABCExtensionArray, np.ndarray)):
if not is_signed_integer_dtype(comps):
# GH#46485 Use object to avoid upcast to float64 later
# TODO: Share with _find_common_type_compat
values = construct_1d_object_array_from_listlike(list(values))
else:
values = _ensure_arraylike(list(values))
elif isinstance(values, ABCMultiIndex):
# Avoid raising in extract_array
values = np.array(values)
else:
values = extract_array(values, extract_numpy=True, extract_range=True)
comps_array = _ensure_arraylike(comps)
comps_array = extract_array(comps_array, extract_numpy=True)
if not isinstance(comps_array, np.ndarray):
# i.e. Extension Array
return comps_array.isin(values)
elif needs_i8_conversion(comps_array.dtype):
# Dispatch to DatetimeLikeArrayMixin.isin
return pd_array(comps_array).isin(values)
elif needs_i8_conversion(values.dtype) and not is_object_dtype(comps_array.dtype):
# e.g. comps_array are integers and values are datetime64s
return np.zeros(comps_array.shape, dtype=bool)
# TODO: not quite right ... Sparse/Categorical
elif needs_i8_conversion(values.dtype):
return isin(comps_array, values.astype(object))
elif isinstance(values.dtype, ExtensionDtype):
return isin(np.asarray(comps_array), np.asarray(values))
# GH16012
# Ensure np.in1d doesn't get object types or it *may* throw an exception
# Albeit hashmap has O(1) look-up (vs. O(logn) in sorted array),
# in1d is faster for small sizes
if (
len(comps_array) > 1_000_000
and len(values) <= 26
and not is_object_dtype(comps_array)
):
# If the values include nan we need to check for nan explicitly
# since np.nan it not equal to np.nan
if isna(values).any():
def f(c, v):
return np.logical_or(np.in1d(c, v), np.isnan(c))
else:
f = np.in1d
else:
common = np.find_common_type([values.dtype, comps_array.dtype], [])
values = values.astype(common, copy=False)
comps_array = comps_array.astype(common, copy=False)
f = htable.ismember
return f(comps_array, values)
def factorize_array(
values: np.ndarray,
na_sentinel: int | None = -1,
size_hint: int | None = None,
na_value: object = None,
mask: npt.NDArray[np.bool_] | None = None,
) -> tuple[npt.NDArray[np.intp], np.ndarray]:
"""
Factorize a numpy array to codes and uniques.
This doesn't do any coercion of types or unboxing before factorization.
Parameters
----------
values : ndarray
na_sentinel : int, default -1
size_hint : int, optional
Passed through to the hashtable's 'get_labels' method
na_value : object, optional
A value in `values` to consider missing. Note: only use this
parameter when you know that you don't have any values pandas would
consider missing in the array (NaN for float data, iNaT for
datetimes, etc.).
mask : ndarray[bool], optional
If not None, the mask is used as indicator for missing values
(True = missing, False = valid) instead of `na_value` or
condition "val != val".
Returns
-------
codes : ndarray[np.intp]
uniques : ndarray
"""
ignore_na = na_sentinel is not None
if not ignore_na:
na_sentinel = -1
original = values
if values.dtype.kind in ["m", "M"]:
# _get_hashtable_algo will cast dt64/td64 to i8 via _ensure_data, so we
# need to do the same to na_value. We are assuming here that the passed
# na_value is an appropriately-typed NaT.
# e.g. test_where_datetimelike_categorical
na_value = iNaT
hash_klass, values = _get_hashtable_algo(values)
table = hash_klass(size_hint or len(values))
uniques, codes = table.factorize(
values,
na_sentinel=na_sentinel,
na_value=na_value,
mask=mask,
ignore_na=ignore_na,
)
# re-cast e.g. i8->dt64/td64, uint8->bool
uniques = _reconstruct_data(uniques, original.dtype, original)
codes = ensure_platform_int(codes)
return codes, uniques
@doc(
values=dedent(
"""\
values : sequence
A 1-D sequence. Sequences that aren't pandas objects are
coerced to ndarrays before factorization.
"""
),
sort=dedent(
"""\
sort : bool, default False
Sort `uniques` and shuffle `codes` to maintain the
relationship.
"""
),
size_hint=dedent(
"""\
size_hint : int, optional
Hint to the hashtable sizer.
"""
),
)
def factorize(
values,
sort: bool = False,
na_sentinel: int | None | lib.NoDefault = lib.no_default,
use_na_sentinel: bool | lib.NoDefault = lib.no_default,
size_hint: int | None = None,
) -> tuple[np.ndarray, np.ndarray | Index]:
"""
Encode the object as an enumerated type or categorical variable.
This method is useful for obtaining a numeric representation of an
array when all that matters is identifying distinct values. `factorize`
is available as both a top-level function :func:`pandas.factorize`,
and as a method :meth:`Series.factorize` and :meth:`Index.factorize`.
Parameters
----------
{values}{sort}
na_sentinel : int or None, default -1
Value to mark "not found". If None, will not drop the NaN
from the uniques of the values.
.. deprecated:: 1.5.0
The na_sentinel argument is deprecated and
will be removed in a future version of pandas. Specify use_na_sentinel as
either True or False.
.. versionchanged:: 1.1.2
use_na_sentinel : bool, default True
If True, the sentinel -1 will be used for NaN values. If False,
NaN values will be encoded as non-negative integers and will not drop the
NaN from the uniques of the values.
.. versionadded:: 1.5.0
{size_hint}\
Returns
-------
codes : ndarray
An integer ndarray that's an indexer into `uniques`.
``uniques.take(codes)`` will have the same values as `values`.
uniques : ndarray, Index, or Categorical
The unique valid values. When `values` is Categorical, `uniques`
is a Categorical. When `values` is some other pandas object, an
`Index` is returned. Otherwise, a 1-D ndarray is returned.
.. note::
Even if there's a missing value in `values`, `uniques` will
*not* contain an entry for it.
See Also
--------
cut : Discretize continuous-valued array.
unique : Find the unique value in an array.
Notes
-----
Reference :ref:`the user guide <reshaping.factorize>` for more examples.
Examples
--------
These examples all show factorize as a top-level method like
``pd.factorize(values)``. The results are identical for methods like
:meth:`Series.factorize`.
>>> codes, uniques = pd.factorize(['b', 'b', 'a', 'c', 'b'])
>>> codes
array([0, 0, 1, 2, 0]...)
>>> uniques
array(['b', 'a', 'c'], dtype=object)
With ``sort=True``, the `uniques` will be sorted, and `codes` will be
shuffled so that the relationship is the maintained.
>>> codes, uniques = pd.factorize(['b', 'b', 'a', 'c', 'b'], sort=True)
>>> codes
array([1, 1, 0, 2, 1]...)
>>> uniques
array(['a', 'b', 'c'], dtype=object)
When ``use_na_sentinel=True`` (the default), missing values are indicated in
the `codes` with the sentinel value ``-1`` and missing values are not
included in `uniques`.
>>> codes, uniques = pd.factorize(['b', None, 'a', 'c', 'b'])
>>> codes
array([ 0, -1, 1, 2, 0]...)
>>> uniques
array(['b', 'a', 'c'], dtype=object)
Thus far, we've only factorized lists (which are internally coerced to
NumPy arrays). When factorizing pandas objects, the type of `uniques`
will differ. For Categoricals, a `Categorical` is returned.
>>> cat = pd.Categorical(['a', 'a', 'c'], categories=['a', 'b', 'c'])
>>> codes, uniques = pd.factorize(cat)
>>> codes
array([0, 0, 1]...)
>>> uniques
['a', 'c']
Categories (3, object): ['a', 'b', 'c']
Notice that ``'b'`` is in ``uniques.categories``, despite not being
present in ``cat.values``.
For all other pandas objects, an Index of the appropriate type is
returned.
>>> cat = pd.Series(['a', 'a', 'c'])
>>> codes, uniques = pd.factorize(cat)
>>> codes
array([0, 0, 1]...)
>>> uniques
Index(['a', 'c'], dtype='object')
If NaN is in the values, and we want to include NaN in the uniques of the
values, it can be achieved by setting ``use_na_sentinel=False``.
>>> values = np.array([1, 2, 1, np.nan])
>>> codes, uniques = pd.factorize(values) # default: use_na_sentinel=True
>>> codes
array([ 0, 1, 0, -1])
>>> uniques
array([1., 2.])
>>> codes, uniques = pd.factorize(values, use_na_sentinel=False)
>>> codes
array([0, 1, 0, 2])
>>> uniques
array([ 1., 2., nan])
"""
# Implementation notes: This method is responsible for 3 things
# 1.) coercing data to array-like (ndarray, Index, extension array)
# 2.) factorizing codes and uniques
# 3.) Maybe boxing the uniques in an Index
#
# Step 2 is dispatched to extension types (like Categorical). They are
# responsible only for factorization. All data coercion, sorting and boxing
# should happen here.
# GH#46910 deprecated na_sentinel in favor of use_na_sentinel:
# na_sentinel=None corresponds to use_na_sentinel=False
# na_sentinel=-1 correspond to use_na_sentinel=True
# Other na_sentinel values will not be supported when the deprecation is enforced.
na_sentinel = resolve_na_sentinel(na_sentinel, use_na_sentinel)
if isinstance(values, ABCRangeIndex):
return values.factorize(sort=sort)
values = _ensure_arraylike(values)
original = values
if not isinstance(values, ABCMultiIndex):
values = extract_array(values, extract_numpy=True)
# GH35667, if na_sentinel=None, we will not dropna NaNs from the uniques
# of values, assign na_sentinel=-1 to replace code value for NaN.
dropna = na_sentinel is not None
if (
isinstance(values, (ABCDatetimeArray, ABCTimedeltaArray))
and values.freq is not None
):
# The presence of 'freq' means we can fast-path sorting and know there
# aren't NAs
codes, uniques = values.factorize(sort=sort)
return _re_wrap_factorize(original, uniques, codes)
elif not isinstance(values.dtype, np.dtype):
if (
na_sentinel == -1 or na_sentinel is None
) and "use_na_sentinel" in inspect.signature(values.factorize).parameters:
# Avoid using catch_warnings when possible
# GH#46910 - TimelikeOps has deprecated signature
codes, uniques = values.factorize( # type: ignore[call-arg]
use_na_sentinel=na_sentinel is not None
)
else:
na_sentinel_arg = -1 if na_sentinel is None else na_sentinel
with warnings.catch_warnings():
# We've already warned above
warnings.filterwarnings("ignore", ".*use_na_sentinel.*", FutureWarning)
codes, uniques = values.factorize(na_sentinel=na_sentinel_arg)
else:
values = np.asarray(values) # convert DTA/TDA/MultiIndex
# TODO: pass na_sentinel=na_sentinel to factorize_array. When sort is True and
# na_sentinel is None we append NA on the end because safe_sort does not
# handle null values in uniques.
if na_sentinel is None and sort:
na_sentinel_arg = -1
elif na_sentinel is None:
na_sentinel_arg = None
else:
na_sentinel_arg = na_sentinel
if not dropna and not sort and is_object_dtype(values):
# factorize can now handle differentiating various types of null values.
# These can only occur when the array has object dtype.
# However, for backwards compatibility we only use the null for the
# provided dtype. This may be revisited in the future, see GH#48476.
null_mask = isna(values)
if null_mask.any():
na_value = na_value_for_dtype(values.dtype, compat=False)
# Don't modify (potentially user-provided) array
values = np.where(null_mask, na_value, values)
codes, uniques = factorize_array(
values,
na_sentinel=na_sentinel_arg,
size_hint=size_hint,
)
if sort and len(uniques) > 0:
if na_sentinel is None:
# TODO: Can remove when na_sentinel=na_sentinel as in TODO above
na_sentinel = -1
uniques, codes = safe_sort(
uniques, codes, na_sentinel=na_sentinel, assume_unique=True, verify=False
)
if not dropna and sort:
# TODO: Can remove entire block when na_sentinel=na_sentinel as in TODO above
if na_sentinel is None:
na_sentinel_arg = -1
else:
na_sentinel_arg = na_sentinel
code_is_na = codes == na_sentinel_arg
if code_is_na.any():
# na_value is set based on the dtype of uniques, and compat set to False is
# because we do not want na_value to be 0 for integers
na_value = na_value_for_dtype(uniques.dtype, compat=False)
uniques = np.append(uniques, [na_value])
codes = np.where(code_is_na, len(uniques) - 1, codes)
uniques = _reconstruct_data(uniques, original.dtype, original)
return _re_wrap_factorize(original, uniques, codes)
def resolve_na_sentinel(
na_sentinel: int | None | lib.NoDefault,
use_na_sentinel: bool | lib.NoDefault,
) -> int | None:
"""
Determine value of na_sentinel for factorize methods.
See GH#46910 for details on the deprecation.
Parameters
----------
na_sentinel : int, None, or lib.no_default
Value passed to the method.
use_na_sentinel : bool or lib.no_default
Value passed to the method.
Returns
-------
Resolved value of na_sentinel.
"""
if na_sentinel is not lib.no_default and use_na_sentinel is not lib.no_default:
raise ValueError(
"Cannot specify both `na_sentinel` and `use_na_sentile`; "
f"got `na_sentinel={na_sentinel}` and `use_na_sentinel={use_na_sentinel}`"
)
if na_sentinel is lib.no_default:
result = -1 if use_na_sentinel is lib.no_default or use_na_sentinel else None
else:
if na_sentinel is None:
msg = (
"Specifying `na_sentinel=None` is deprecated, specify "
"`use_na_sentinel=False` instead."
)
elif na_sentinel == -1:
msg = (
"Specifying `na_sentinel=-1` is deprecated, specify "
"`use_na_sentinel=True` instead."
)
else:
msg = (
"Specifying the specific value to use for `na_sentinel` is "
"deprecated and will be removed in a future version of pandas. "
"Specify `use_na_sentinel=True` to use the sentinel value -1, and "
"`use_na_sentinel=False` to encode NaN values."
)
warnings.warn(
msg, FutureWarning, stacklevel=find_stack_level(inspect.currentframe())
)
result = na_sentinel
return result
def _re_wrap_factorize(original, uniques, codes: np.ndarray):
"""
Wrap factorize results in Series or Index depending on original type.
"""
if isinstance(original, ABCIndex):
uniques = ensure_wrapped_if_datetimelike(uniques)
uniques = original._shallow_copy(uniques, name=None)
elif isinstance(original, ABCSeries):
from pandas import Index
uniques = Index(uniques)
return codes, uniques
def value_counts(
values,
sort: bool = True,
ascending: bool = False,
normalize: bool = False,
bins=None,
dropna: bool = True,
) -> Series:
"""
Compute a histogram of the counts of non-null values.
Parameters
----------
values : ndarray (1-d)
sort : bool, default True
Sort by values
ascending : bool, default False
Sort in ascending order
normalize: bool, default False
If True then compute a relative histogram
bins : integer, optional
Rather than count values, group them into half-open bins,
convenience for pd.cut, only works with numeric data
dropna : bool, default True
Don't include counts of NaN
Returns
-------
Series
"""
from pandas import (
Index,
Series,
)
name = getattr(values, "name", None)
if bins is not None:
from pandas.core.reshape.tile import cut
values = Series(values)
try:
ii = cut(values, bins, include_lowest=True)
except TypeError as err:
raise TypeError("bins argument only works with numeric data.") from err
# count, remove nulls (from the index), and but the bins
result = ii.value_counts(dropna=dropna)
result = result[result.index.notna()]
result.index = result.index.astype("interval")
result = result.sort_index()
# if we are dropna and we have NO values
if dropna and (result._values == 0).all():
result = result.iloc[0:0]
# normalizing is by len of all (regardless of dropna)
counts = np.array([len(ii)])
else:
if is_extension_array_dtype(values):
# handle Categorical and sparse,
result = Series(values)._values.value_counts(dropna=dropna)
result.name = name
counts = result._values
else:
values = _ensure_arraylike(values)
keys, counts = value_counts_arraylike(values, dropna)
# For backwards compatibility, we let Index do its normal type
# inference, _except_ for if if infers from object to bool.
idx = Index._with_infer(keys)
if idx.dtype == bool and keys.dtype == object:
idx = idx.astype(object)
result = Series(counts, index=idx, name=name)
if sort:
result = result.sort_values(ascending=ascending)
if normalize:
result = result / counts.sum()