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test_apply.py
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# coding=utf-8
# pylint: disable-msg=E1101,W0612
from collections import Counter, OrderedDict, defaultdict
from itertools import chain
import numpy as np
import pytest
import pandas.compat as compat
from pandas.compat import lrange
import pandas as pd
from pandas import DataFrame, Index, Series, isna
from pandas.conftest import _get_cython_table_params
import pandas.util.testing as tm
from pandas.util.testing import assert_frame_equal, assert_series_equal
class TestSeriesApply():
def test_apply(self, datetime_series):
with np.errstate(all='ignore'):
tm.assert_series_equal(datetime_series.apply(np.sqrt),
np.sqrt(datetime_series))
# element-wise apply
import math
tm.assert_series_equal(datetime_series.apply(math.exp),
np.exp(datetime_series))
# empty series
s = Series(dtype=object, name='foo', index=pd.Index([], name='bar'))
rs = s.apply(lambda x: x)
tm.assert_series_equal(s, rs)
# check all metadata (GH 9322)
assert s is not rs
assert s.index is rs.index
assert s.dtype == rs.dtype
assert s.name == rs.name
# index but no data
s = Series(index=[1, 2, 3])
rs = s.apply(lambda x: x)
tm.assert_series_equal(s, rs)
def test_apply_same_length_inference_bug(self):
s = Series([1, 2])
f = lambda x: (x, x + 1)
result = s.apply(f)
expected = s.map(f)
assert_series_equal(result, expected)
s = Series([1, 2, 3])
result = s.apply(f)
expected = s.map(f)
assert_series_equal(result, expected)
def test_apply_dont_convert_dtype(self):
s = Series(np.random.randn(10))
f = lambda x: x if x > 0 else np.nan
result = s.apply(f, convert_dtype=False)
assert result.dtype == object
def test_with_string_args(self, datetime_series):
for arg in ['sum', 'mean', 'min', 'max', 'std']:
result = datetime_series.apply(arg)
expected = getattr(datetime_series, arg)()
assert result == expected
def test_apply_args(self):
s = Series(['foo,bar'])
result = s.apply(str.split, args=(',', ))
assert result[0] == ['foo', 'bar']
assert isinstance(result[0], list)
def test_series_map_box_timestamps(self):
# GH#2689, GH#2627
ser = Series(pd.date_range('1/1/2000', periods=10))
def func(x):
return (x.hour, x.day, x.month)
# it works!
ser.map(func)
ser.apply(func)
def test_apply_box(self):
# ufunc will not be boxed. Same test cases as the test_map_box
vals = [pd.Timestamp('2011-01-01'), pd.Timestamp('2011-01-02')]
s = pd.Series(vals)
assert s.dtype == 'datetime64[ns]'
# boxed value must be Timestamp instance
res = s.apply(lambda x: '{0}_{1}_{2}'.format(x.__class__.__name__,
x.day, x.tz))
exp = pd.Series(['Timestamp_1_None', 'Timestamp_2_None'])
tm.assert_series_equal(res, exp)
vals = [pd.Timestamp('2011-01-01', tz='US/Eastern'),
pd.Timestamp('2011-01-02', tz='US/Eastern')]
s = pd.Series(vals)
assert s.dtype == 'datetime64[ns, US/Eastern]'
res = s.apply(lambda x: '{0}_{1}_{2}'.format(x.__class__.__name__,
x.day, x.tz))
exp = pd.Series(['Timestamp_1_US/Eastern', 'Timestamp_2_US/Eastern'])
tm.assert_series_equal(res, exp)
# timedelta
vals = [pd.Timedelta('1 days'), pd.Timedelta('2 days')]
s = pd.Series(vals)
assert s.dtype == 'timedelta64[ns]'
res = s.apply(lambda x: '{0}_{1}'.format(x.__class__.__name__, x.days))
exp = pd.Series(['Timedelta_1', 'Timedelta_2'])
tm.assert_series_equal(res, exp)
# period
vals = [pd.Period('2011-01-01', freq='M'),
pd.Period('2011-01-02', freq='M')]
s = pd.Series(vals)
assert s.dtype == 'Period[M]'
res = s.apply(lambda x: '{0}_{1}'.format(x.__class__.__name__,
x.freqstr))
exp = pd.Series(['Period_M', 'Period_M'])
tm.assert_series_equal(res, exp)
def test_apply_datetimetz(self):
values = pd.date_range('2011-01-01', '2011-01-02',
freq='H').tz_localize('Asia/Tokyo')
s = pd.Series(values, name='XX')
result = s.apply(lambda x: x + pd.offsets.Day())
exp_values = pd.date_range('2011-01-02', '2011-01-03',
freq='H').tz_localize('Asia/Tokyo')
exp = pd.Series(exp_values, name='XX')
tm.assert_series_equal(result, exp)
# change dtype
# GH 14506 : Returned dtype changed from int32 to int64
result = s.apply(lambda x: x.hour)
exp = pd.Series(list(range(24)) + [0], name='XX', dtype=np.int64)
tm.assert_series_equal(result, exp)
# not vectorized
def f(x):
if not isinstance(x, pd.Timestamp):
raise ValueError
return str(x.tz)
result = s.map(f)
exp = pd.Series(['Asia/Tokyo'] * 25, name='XX')
tm.assert_series_equal(result, exp)
def test_apply_dict_depr(self):
tsdf = pd.DataFrame(np.random.randn(10, 3),
columns=['A', 'B', 'C'],
index=pd.date_range('1/1/2000', periods=10))
with tm.assert_produces_warning(FutureWarning):
tsdf.A.agg({'foo': ['sum', 'mean']})
class TestSeriesAggregate():
def test_transform(self, string_series):
# transforming functions
with np.errstate(all='ignore'):
f_sqrt = np.sqrt(string_series)
f_abs = np.abs(string_series)
# ufunc
result = string_series.transform(np.sqrt)
expected = f_sqrt.copy()
assert_series_equal(result, expected)
result = string_series.apply(np.sqrt)
assert_series_equal(result, expected)
# list-like
result = string_series.transform([np.sqrt])
expected = f_sqrt.to_frame().copy()
expected.columns = ['sqrt']
assert_frame_equal(result, expected)
result = string_series.transform([np.sqrt])
assert_frame_equal(result, expected)
result = string_series.transform(['sqrt'])
assert_frame_equal(result, expected)
# multiple items in list
# these are in the order as if we are applying both functions per
# series and then concatting
expected = pd.concat([f_sqrt, f_abs], axis=1)
expected.columns = ['sqrt', 'absolute']
result = string_series.apply([np.sqrt, np.abs])
assert_frame_equal(result, expected)
result = string_series.transform(['sqrt', 'abs'])
expected.columns = ['sqrt', 'abs']
assert_frame_equal(result, expected)
# dict, provide renaming
expected = pd.concat([f_sqrt, f_abs], axis=1)
expected.columns = ['foo', 'bar']
expected = expected.unstack().rename('series')
result = string_series.apply({'foo': np.sqrt, 'bar': np.abs})
assert_series_equal(result.reindex_like(expected), expected)
def test_transform_and_agg_error(self, string_series):
# we are trying to transform with an aggregator
with pytest.raises(ValueError):
string_series.transform(['min', 'max'])
with pytest.raises(ValueError):
with np.errstate(all='ignore'):
string_series.agg(['sqrt', 'max'])
with pytest.raises(ValueError):
with np.errstate(all='ignore'):
string_series.transform(['sqrt', 'max'])
with pytest.raises(ValueError):
with np.errstate(all='ignore'):
string_series.agg({'foo': np.sqrt, 'bar': 'sum'})
def test_demo(self):
# demonstration tests
s = Series(range(6), dtype='int64', name='series')
result = s.agg(['min', 'max'])
expected = Series([0, 5], index=['min', 'max'], name='series')
tm.assert_series_equal(result, expected)
result = s.agg({'foo': 'min'})
expected = Series([0], index=['foo'], name='series')
tm.assert_series_equal(result, expected)
# nested renaming
with tm.assert_produces_warning(FutureWarning):
result = s.agg({'foo': ['min', 'max']})
expected = DataFrame(
{'foo': [0, 5]},
index=['min', 'max']).unstack().rename('series')
tm.assert_series_equal(result, expected)
def test_multiple_aggregators_with_dict_api(self):
s = Series(range(6), dtype='int64', name='series')
# nested renaming
with tm.assert_produces_warning(FutureWarning):
result = s.agg({'foo': ['min', 'max'], 'bar': ['sum', 'mean']})
expected = DataFrame(
{'foo': [5.0, np.nan, 0.0, np.nan],
'bar': [np.nan, 2.5, np.nan, 15.0]},
columns=['foo', 'bar'],
index=['max', 'mean',
'min', 'sum']).unstack().rename('series')
tm.assert_series_equal(result.reindex_like(expected), expected)
def test_agg_apply_evaluate_lambdas_the_same(self, string_series):
# test that we are evaluating row-by-row first
# before vectorized evaluation
result = string_series.apply(lambda x: str(x))
expected = string_series.agg(lambda x: str(x))
tm.assert_series_equal(result, expected)
result = string_series.apply(str)
expected = string_series.agg(str)
tm.assert_series_equal(result, expected)
def test_with_nested_series(self, datetime_series):
# GH 2316
# .agg with a reducer and a transform, what to do
result = datetime_series.apply(lambda x: Series(
[x, x ** 2], index=['x', 'x^2']))
expected = DataFrame({'x': datetime_series,
'x^2': datetime_series ** 2})
tm.assert_frame_equal(result, expected)
result = datetime_series.agg(lambda x: Series(
[x, x ** 2], index=['x', 'x^2']))
tm.assert_frame_equal(result, expected)
def test_replicate_describe(self, string_series):
# this also tests a result set that is all scalars
expected = string_series.describe()
result = string_series.apply(OrderedDict(
[('count', 'count'),
('mean', 'mean'),
('std', 'std'),
('min', 'min'),
('25%', lambda x: x.quantile(0.25)),
('50%', 'median'),
('75%', lambda x: x.quantile(0.75)),
('max', 'max')]))
assert_series_equal(result, expected)
def test_reduce(self, string_series):
# reductions with named functions
result = string_series.agg(['sum', 'mean'])
expected = Series([string_series.sum(),
string_series.mean()],
['sum', 'mean'],
name=string_series.name)
assert_series_equal(result, expected)
def test_non_callable_aggregates(self):
# test agg using non-callable series attributes
s = Series([1, 2, None])
# Calling agg w/ just a string arg same as calling s.arg
result = s.agg('size')
expected = s.size
assert result == expected
# test when mixed w/ callable reducers
result = s.agg(['size', 'count', 'mean'])
expected = Series(OrderedDict([('size', 3.0),
('count', 2.0),
('mean', 1.5)]))
assert_series_equal(result[expected.index], expected)
@pytest.mark.parametrize("series, func, expected", chain(
_get_cython_table_params(Series(), [
('sum', 0),
('max', np.nan),
('min', np.nan),
('all', True),
('any', False),
('mean', np.nan),
('prod', 1),
('std', np.nan),
('var', np.nan),
('median', np.nan),
]),
_get_cython_table_params(Series([np.nan, 1, 2, 3]), [
('sum', 6),
('max', 3),
('min', 1),
('all', True),
('any', True),
('mean', 2),
('prod', 6),
('std', 1),
('var', 1),
('median', 2),
]),
_get_cython_table_params(Series('a b c'.split()), [
('sum', 'abc'),
('max', 'c'),
('min', 'a'),
('all', 'c'), # see GH12863
('any', 'a'),
]),
))
def test_agg_cython_table(self, series, func, expected):
# GH21224
# test reducing functions in
# pandas.core.base.SelectionMixin._cython_table
result = series.agg(func)
if tm.is_number(expected):
assert np.isclose(result, expected, equal_nan=True)
else:
assert result == expected
@pytest.mark.parametrize("series, func, expected", chain(
_get_cython_table_params(Series(), [
('cumprod', Series([], Index([]))),
('cumsum', Series([], Index([]))),
]),
_get_cython_table_params(Series([np.nan, 1, 2, 3]), [
('cumprod', Series([np.nan, 1, 2, 6])),
('cumsum', Series([np.nan, 1, 3, 6])),
]),
_get_cython_table_params(Series('a b c'.split()), [
('cumsum', Series(['a', 'ab', 'abc'])),
]),
))
def test_agg_cython_table_transform(self, series, func, expected):
# GH21224
# test transforming functions in
# pandas.core.base.SelectionMixin._cython_table (cumprod, cumsum)
result = series.agg(func)
tm.assert_series_equal(result, expected)
@pytest.mark.parametrize("series, func, expected", chain(
_get_cython_table_params(Series('a b c'.split()), [
('mean', TypeError), # mean raises TypeError
('prod', TypeError),
('std', TypeError),
('var', TypeError),
('median', TypeError),
('cumprod', TypeError),
])
))
def test_agg_cython_table_raises(self, series, func, expected):
# GH21224
with pytest.raises(expected):
# e.g. Series('a b'.split()).cumprod() will raise
series.agg(func)
class TestSeriesMap():
def test_map(self, datetime_series):
index, data = tm.getMixedTypeDict()
source = Series(data['B'], index=data['C'])
target = Series(data['C'][:4], index=data['D'][:4])
merged = target.map(source)
for k, v in compat.iteritems(merged):
assert v == source[target[k]]
# input could be a dict
merged = target.map(source.to_dict())
for k, v in compat.iteritems(merged):
assert v == source[target[k]]
# function
result = datetime_series.map(lambda x: x * 2)
tm.assert_series_equal(result, datetime_series * 2)
# GH 10324
a = Series([1, 2, 3, 4])
b = Series(["even", "odd", "even", "odd"], dtype="category")
c = Series(["even", "odd", "even", "odd"])
exp = Series(["odd", "even", "odd", np.nan], dtype="category")
tm.assert_series_equal(a.map(b), exp)
exp = Series(["odd", "even", "odd", np.nan])
tm.assert_series_equal(a.map(c), exp)
a = Series(['a', 'b', 'c', 'd'])
b = Series([1, 2, 3, 4],
index=pd.CategoricalIndex(['b', 'c', 'd', 'e']))
c = Series([1, 2, 3, 4], index=Index(['b', 'c', 'd', 'e']))
exp = Series([np.nan, 1, 2, 3])
tm.assert_series_equal(a.map(b), exp)
exp = Series([np.nan, 1, 2, 3])
tm.assert_series_equal(a.map(c), exp)
a = Series(['a', 'b', 'c', 'd'])
b = Series(['B', 'C', 'D', 'E'], dtype='category',
index=pd.CategoricalIndex(['b', 'c', 'd', 'e']))
c = Series(['B', 'C', 'D', 'E'], index=Index(['b', 'c', 'd', 'e']))
exp = Series(pd.Categorical([np.nan, 'B', 'C', 'D'],
categories=['B', 'C', 'D', 'E']))
tm.assert_series_equal(a.map(b), exp)
exp = Series([np.nan, 'B', 'C', 'D'])
tm.assert_series_equal(a.map(c), exp)
@pytest.mark.parametrize("index", tm.all_index_generator(10))
def test_map_empty(self, index):
s = Series(index)
result = s.map({})
expected = pd.Series(np.nan, index=s.index)
tm.assert_series_equal(result, expected)
def test_map_compat(self):
# related GH 8024
s = Series([True, True, False], index=[1, 2, 3])
result = s.map({True: 'foo', False: 'bar'})
expected = Series(['foo', 'foo', 'bar'], index=[1, 2, 3])
assert_series_equal(result, expected)
def test_map_int(self):
left = Series({'a': 1., 'b': 2., 'c': 3., 'd': 4})
right = Series({1: 11, 2: 22, 3: 33})
assert left.dtype == np.float_
assert issubclass(right.dtype.type, np.integer)
merged = left.map(right)
assert merged.dtype == np.float_
assert isna(merged['d'])
assert not isna(merged['c'])
def test_map_type_inference(self):
s = Series(lrange(3))
s2 = s.map(lambda x: np.where(x == 0, 0, 1))
assert issubclass(s2.dtype.type, np.integer)
def test_map_decimal(self, string_series):
from decimal import Decimal
result = string_series.map(lambda x: Decimal(str(x)))
assert result.dtype == np.object_
assert isinstance(result[0], Decimal)
def test_map_na_exclusion(self):
s = Series([1.5, np.nan, 3, np.nan, 5])
result = s.map(lambda x: x * 2, na_action='ignore')
exp = s * 2
assert_series_equal(result, exp)
def test_map_dict_with_tuple_keys(self):
"""
Due to new MultiIndex-ing behaviour in v0.14.0,
dicts with tuple keys passed to map were being
converted to a multi-index, preventing tuple values
from being mapped properly.
"""
# GH 18496
df = pd.DataFrame({'a': [(1, ), (2, ), (3, 4), (5, 6)]})
label_mappings = {(1, ): 'A', (2, ): 'B', (3, 4): 'A', (5, 6): 'B'}
df['labels'] = df['a'].map(label_mappings)
df['expected_labels'] = pd.Series(['A', 'B', 'A', 'B'], index=df.index)
# All labels should be filled now
tm.assert_series_equal(df['labels'], df['expected_labels'],
check_names=False)
def test_map_counter(self):
s = Series(['a', 'b', 'c'], index=[1, 2, 3])
counter = Counter()
counter['b'] = 5
counter['c'] += 1
result = s.map(counter)
expected = Series([0, 5, 1], index=[1, 2, 3])
assert_series_equal(result, expected)
def test_map_defaultdict(self):
s = Series([1, 2, 3], index=['a', 'b', 'c'])
default_dict = defaultdict(lambda: 'blank')
default_dict[1] = 'stuff'
result = s.map(default_dict)
expected = Series(['stuff', 'blank', 'blank'], index=['a', 'b', 'c'])
assert_series_equal(result, expected)
def test_map_dict_subclass_with_missing(self):
"""
Test Series.map with a dictionary subclass that defines __missing__,
i.e. sets a default value (GH #15999).
"""
class DictWithMissing(dict):
def __missing__(self, key):
return 'missing'
s = Series([1, 2, 3])
dictionary = DictWithMissing({3: 'three'})
result = s.map(dictionary)
expected = Series(['missing', 'missing', 'three'])
assert_series_equal(result, expected)
def test_map_dict_subclass_without_missing(self):
class DictWithoutMissing(dict):
pass
s = Series([1, 2, 3])
dictionary = DictWithoutMissing({3: 'three'})
result = s.map(dictionary)
expected = Series([np.nan, np.nan, 'three'])
assert_series_equal(result, expected)
def test_map_box(self):
vals = [pd.Timestamp('2011-01-01'), pd.Timestamp('2011-01-02')]
s = pd.Series(vals)
assert s.dtype == 'datetime64[ns]'
# boxed value must be Timestamp instance
res = s.map(lambda x: '{0}_{1}_{2}'.format(x.__class__.__name__,
x.day, x.tz))
exp = pd.Series(['Timestamp_1_None', 'Timestamp_2_None'])
tm.assert_series_equal(res, exp)
vals = [pd.Timestamp('2011-01-01', tz='US/Eastern'),
pd.Timestamp('2011-01-02', tz='US/Eastern')]
s = pd.Series(vals)
assert s.dtype == 'datetime64[ns, US/Eastern]'
res = s.map(lambda x: '{0}_{1}_{2}'.format(x.__class__.__name__,
x.day, x.tz))
exp = pd.Series(['Timestamp_1_US/Eastern', 'Timestamp_2_US/Eastern'])
tm.assert_series_equal(res, exp)
# timedelta
vals = [pd.Timedelta('1 days'), pd.Timedelta('2 days')]
s = pd.Series(vals)
assert s.dtype == 'timedelta64[ns]'
res = s.map(lambda x: '{0}_{1}'.format(x.__class__.__name__, x.days))
exp = pd.Series(['Timedelta_1', 'Timedelta_2'])
tm.assert_series_equal(res, exp)
# period
vals = [pd.Period('2011-01-01', freq='M'),
pd.Period('2011-01-02', freq='M')]
s = pd.Series(vals)
assert s.dtype == 'Period[M]'
res = s.map(lambda x: '{0}_{1}'.format(x.__class__.__name__,
x.freqstr))
exp = pd.Series(['Period_M', 'Period_M'])
tm.assert_series_equal(res, exp)
def test_map_categorical(self):
values = pd.Categorical(list('ABBABCD'), categories=list('DCBA'),
ordered=True)
s = pd.Series(values, name='XX', index=list('abcdefg'))
result = s.map(lambda x: x.lower())
exp_values = pd.Categorical(list('abbabcd'), categories=list('dcba'),
ordered=True)
exp = pd.Series(exp_values, name='XX', index=list('abcdefg'))
tm.assert_series_equal(result, exp)
tm.assert_categorical_equal(result.values, exp_values)
result = s.map(lambda x: 'A')
exp = pd.Series(['A'] * 7, name='XX', index=list('abcdefg'))
tm.assert_series_equal(result, exp)
assert result.dtype == np.object
with pytest.raises(NotImplementedError):
s.map(lambda x: x, na_action='ignore')
def test_map_datetimetz(self):
values = pd.date_range('2011-01-01', '2011-01-02',
freq='H').tz_localize('Asia/Tokyo')
s = pd.Series(values, name='XX')
# keep tz
result = s.map(lambda x: x + pd.offsets.Day())
exp_values = pd.date_range('2011-01-02', '2011-01-03',
freq='H').tz_localize('Asia/Tokyo')
exp = pd.Series(exp_values, name='XX')
tm.assert_series_equal(result, exp)
# change dtype
# GH 14506 : Returned dtype changed from int32 to int64
result = s.map(lambda x: x.hour)
exp = pd.Series(list(range(24)) + [0], name='XX', dtype=np.int64)
tm.assert_series_equal(result, exp)
with pytest.raises(NotImplementedError):
s.map(lambda x: x, na_action='ignore')
# not vectorized
def f(x):
if not isinstance(x, pd.Timestamp):
raise ValueError
return str(x.tz)
result = s.map(f)
exp = pd.Series(['Asia/Tokyo'] * 25, name='XX')
tm.assert_series_equal(result, exp)
@pytest.mark.parametrize("vals,mapping,exp", [
(list('abc'), {np.nan: 'not NaN'}, [np.nan] * 3 + ['not NaN']),
(list('abc'), {'a': 'a letter'}, ['a letter'] + [np.nan] * 3),
(list(range(3)), {0: 42}, [42] + [np.nan] * 3)])
def test_map_missing_mixed(self, vals, mapping, exp):
# GH20495
s = pd.Series(vals + [np.nan])
result = s.map(mapping)
tm.assert_series_equal(result, pd.Series(exp))