✨ NEW: Added some packages and commands in class file (#39)

* added packages and commands in class file

* modified test fixtures

* bibtex version issue

Author: AakashGfude

jupyterbook_latex/theme/jupyterBook.cls

@@ -4,15 +4,42 @@
 \RequirePackage{xcolor}
 \RequirePackage[utf8]{inputenc}
 \RequirePackage{graphicx}
-\RequirePackage{amsmath}
+\RequirePackage{amsmath, amssymb}
 \RequirePackage{mathrsfs}
+\RequirePackage{tikz}
+\usetikzlibrary{arrows}
+\usetikzlibrary{calc}
+\usetikzlibrary{intersections}
+\usetikzlibrary{decorations}
+\RequirePackage{pgf}
+\RequirePackage{pgfplots}
+\RequirePackage{bbm}
 
 \def\sphinxdocclass{report}
 \LoadClass{sphinxmanual}
 
 \setlength{\textwidth}{17.5cm}
 \setlength{\textheight}{22cm}
 
-\DeclareMathOperator*{\argmax}{arg\,max}
+\newcommand{\RR}{\mathbbm R}
+\newcommand{\NN}{\mathbbm N}
+\newcommand{\PP}{\mathbbm P}
+\newcommand{\EE}{\mathbbm E \,}
+\newcommand{\XX}{\mathbbm X}
+\newcommand{\ZZ}{\mathbbm Z}
+\newcommand{\QQ}{\mathbbm Q}
+\newcommand{\fF}{\mathcal F}
+\newcommand{\dD}{\mathcal D}
+\newcommand{\lL}{\mathcal L}
+\newcommand{\gG}{\mathcal G}
+\newcommand{\hH}{\mathcal H}
+\newcommand{\nN}{\mathcal N}
+\newcommand{\pP}{\mathcal P}
+\DeclareMathOperator{\trace}{trace}
+\DeclareMathOperator{\Var}{Var}
+\DeclareMathOperator{\Span}{span}
+\DeclareMathOperator{\proj}{proj}
+\DeclareMathOperator{\col}{col}
 \DeclareMathOperator*{\argmin}{arg\,min}
+\DeclareMathOperator*{\argmax}{arg\,max}
 \DeclareMathOperator*{\gt}{>}

setup.py

@@ -34,7 +34,7 @@
             "pytest-regressions",
             "texsoup",
             "jupyter-book",
-            "sphinxcontrib-bibtex==1.0.0",
+            "sphinxcontrib-bibtex",
         ],
         "rtd": [
             "sphinx>=3.0",

tests/test_toc/test_toc.aux

@@ -8,18 +8,21 @@
 \phantomsection\label{\detokenize{intro::doc}}
 
 
+\sphinxAtStartPar
 Lorem ipsum dolor sit amet, consectetur adipiscing elit. Duis vel nunc vestibulum, pretium urna ac, hendrerit diam. Nulla ut mi sit amet dui placerat tempor at quis magna. Sed porttitor blandit consequat. Fusce efficitur mi eget pharetra cursus. Sed vel blandit dui, et pharetra velit. Ut eget erat rutrum, maximus felis ullamcorper, congue urna. Ut pellentesque, orci vel consectetur aliquam, velit elit vehicula libero, eu blandit tellus risus rhoncus massa. Curabitur id libero ut sapien aliquet dapibus nec et dolor. Pellentesque tincidunt iaculis ipsum vitae pretium. Quisque et egestas orci, sed dignissim sem. Vestibulum sed commodo dui. Nulla rutrum vulputate nisl nec interdum. Cras pharetra quam et tellus convallis, ut hendrerit mi mollis. Integer finibus tellus porttitor tellus bibendum, a auctor purus dapibus. Etiam mauris est, blandit ut dapibus eget, rutrum et dolor.
 
 \begin{DUlineblock}{0em}
 \item[] \sphinxstylestrong{\Large This is H2}
 \end{DUlineblock}
 
+\sphinxAtStartPar
 Etiam interdum tempor augue at volutpat. Nulla sit amet volutpat elit. In vehicula dapibus velit, a placerat neque blandit et. Etiam non mollis nibh. Mauris tortor purus, semper vel libero at, faucibus mattis enim. Sed elit mi, vestibulum sit amet porttitor in, elementum a sem. Orci varius natoque penatibus et magnis dis parturient montes, nascetur ridiculus mus. Donec gravida faucibus enim, at venenatis ante. Curabitur viverra neque vel nulla condimentum ultrices quis a ipsum.
 
 \begin{DUlineblock}{0em}
 \item[] \sphinxstylestrong{\large This is H3}
 \end{DUlineblock}
 
+\sphinxAtStartPar
 Sed elit mi, vestibulum sit amet porttitor in, elementum a sem. Orci varius natoque penatibus et magnis dis parturient montes, nascetur ridiculus mus. Donec gravida faucibus enim, at venenatis ante. Curabitur viverra neque vel nulla condimentum ultrices quis a ipsum.
 
 
@@ -28,25 +31,27 @@ \part{part1}
 
 \chapter{Chapter 1}
 \label{\detokenize{part1/chap1:chapter-1}}\label{\detokenize{part1/chap1::doc}}
+\sphinxAtStartPar
 Chap 1 Lorem ipsum dolor sit amet, consectetur adipiscing elit. In dapibus.
 
 
 \chapter{Chapter 2}
 \label{\detokenize{part1/chap2:chapter-2}}\label{\detokenize{part1/chap2::doc}}
+\sphinxAtStartPar
 Chap 2 Lorem ipsum dolor sit amet, consectetur adipiscing elit. In dapibus.
 
-
-
-\sphinxcite{part1/chap2:perez2011python}\sphinxcite{part1/chap2:holdgraf-rapid-2016}\sphinxcite{part1/chap2:repec-the-publsh-1367}\sphinxcite{part1/chap2:caporaso2010qiime}
+\sphinxAtStartPar{\color{red}\bfseries{}:cite:`perez2011python,holdgraf\_rapid\_2016,RePEc:the:publsh:1367,caporaso2010qiime`}
 
 
 \section{Section 1}
 \label{\detokenize{part1/sec1:section-1}}\label{\detokenize{part1/sec1::doc}}
+\sphinxAtStartPar
 Sec 1 Lorem ipsum dolor sit amet, consectetur adipiscing elit. In dapibus.
 
 
 \section{Section 2}
 \label{\detokenize{part1/sec2:section-2}}\label{\detokenize{part1/sec2::doc}}
+\sphinxAtStartPar
 Sec 2 Lorem ipsum dolor sit amet, consectetur adipiscing elit. In dapibus.
 
 
@@ -55,29 +60,21 @@ \part{part2}
 
 \chapter{Chapter 3}
 \label{\detokenize{part2/chap3:chapter-3}}\label{\detokenize{part2/chap3::doc}}
+\sphinxAtStartPar
 Chap 3 Lorem ipsum dolor sit amet, consectetur adipiscing elit. In dapibus.
 
 
 \section{Chap3 sub header}
 \label{\detokenize{part2/chap3:chap3-sub-header}}
+\sphinxAtStartPar
 Etiam quis cursus mi, fringilla aliquet ipsum. Nunc in lorem auctor, hendrerit lacus lobortis, ullamcorper velit. Phasellus turpis justo, tempus nec nibh ut, mattis consectetur lectus. Curabitur sem arcu, vulputate ut accumsan eget, ornare eu urna. Sed dapibus fermentum viverra.
 
 
 \section{Section 1}
 \label{\detokenize{part2/sec1:section-1}}\label{\detokenize{part2/sec1::doc}}
+\sphinxAtStartPar
 Sec 1 Lorem ipsum dolor sit amet, consectetur adipiscing elit. Mauris lacinia varius sapien, et aliquet justo. Fusce sodales, magna malesuada commodo ornare, mauris erat hendrerit augue, dictum luctus dolor quam eget tellus. Nulla porta nibh eros, gravida euismod lorem placerat et. Praesent pulvinar congue gravida.
 
-\begin{sphinxthebibliography}{HdHP+16}
-\bibitem[CKS+10]{part1/chap2:caporaso2010qiime}
-J Gregory Caporaso, Justin Kuczynski, Jesse Stombaugh, Kyle Bittinger, Frederic D Bushman, Elizabeth K Costello, Noah Fierer, Antonio Gonzalez Pena, Julia K Goodrich, Jeffrey I Gordon, and others. Qiime allows analysis of high\sphinxhyphen{}throughput community sequencing data. \sphinxstyleemphasis{Nature methods}, 7(5):335–336, 2010.
-\bibitem[HdHP+16]{part1/chap2:holdgraf-rapid-2016}
-Christopher Ramsay Holdgraf, Wendy de Heer, Brian N. Pasley, Jochem W. Rieger, Nathan Crone, Jack J. Lin, Robert T. Knight, and Frédéric E. Theunissen. Rapid tuning shifts in human auditory cortex enhance speech intelligibility. \sphinxstyleemphasis{Nature Communications}, 7(May):13654, 2016. URL: \sphinxurl{http://www.nature.com/doifinder/10.1038/ncomms13654}, \sphinxhref{https://doi.org/10.1038/ncomms13654}{doi:10.1038/ncomms13654}.
-\bibitem[PGH11]{part1/chap2:perez2011python}
-Fernando Perez, Brian E Granger, and John D Hunter. Python: an ecosystem for scientific computing. \sphinxstyleemphasis{Computing in Science \textbackslash{}\& Engineering}, 13(2):13–21, 2011.
-\bibitem[SK14]{part1/chap2:repec-the-publsh-1367}
-John Stachurski and Takashi Kamihigashi. Stochastic stability in monotone economies. \sphinxstyleemphasis{Theoretical Economics}, 2014.
-\end{sphinxthebibliography}
-