fix: testing issues

* pin epiprocess to ds/r6-clean branch in DESCRIPTION
* update renv.lock with latest epiprocess ds/r6-clean commit
* update as_of call to epix_as_of
* run.R no longer overwrites use_crew from _targets.yml

Author: dshemetov

DESCRIPTION

@@ -44,7 +44,7 @@ VignetteBuilder:
 Remotes:
     cmu-delphi/epidatr,
     cmu-delphi/epipredict,
-    cmu-delphi/epiprocess,
+    cmu-delphi/epiprocess@ds/r6-clean,
     dajmcdon/smoothqr
 Encoding: UTF-8
 Config/testthat/edition: 3

R/looping.R

@@ -109,7 +109,7 @@ slide_forecaster <- function(data,
 
   # append the truth data
   true_value <- archive %>%
-    as_of(archive$versions_end) %>%
+    epiprocess::epix_as_of(archive$versions_end) %>%
     select(geo_value, time_value, !!outcome) %>%
     rename(true_value = !!outcome)
   res %<>%

R/manage_S3.R

@@ -28,9 +28,11 @@ manage_S3_forecast_cache <- function(rel_cache_dir = NULL,
 
   project_prefix <- paste0(prefix, "/", tar_project, "/")
   s3b <- get_bucket(bucket_name, prefix = project_prefix)
-  print(paste0(direction, "ing:"))
-  print(paste("local:", cache_path))
-  print(paste("remote:", prefix))
+  cli::cli_inform(c(
+    "{direction}ing cache to S3 bucket '{bucket_name}'",
+    "i" = "Local cache path: {cache_path}",
+    "i" = "AWS prefix: {prefix}"
+  ))
   if (direction == "sync") {
     if (verbose) {
       s3sync(cache_path, s3b, prefix = project_prefix)

renv.lock

@@ -812,14 +812,15 @@
     },
     "epidatr": {
       "Package": "epidatr",
-      "Version": "1.1.4",
+      "Version": "1.1.5",
       "Source": "GitHub",
       "RemoteType": "github",
       "RemoteHost": "api.github.com",
-      "RemoteUsername": "cmu-delphi",
       "RemoteRepo": "epidatr",
-      "RemoteRef": "dev",
-      "RemoteSha": "a53ad5671cc072518feaed605637d0bf27fde3e6",
+      "RemoteUsername": "cmu-delphi",
+      "RemotePkgRef": "cmu-delphi/epidatr",
+      "RemoteRef": "HEAD",
+      "RemoteSha": "626c30bc07f4aae3c3e6a6c6b825a6cd5eee1ce7",
       "Requirements": [
         "MMWRweek",
         "R",
@@ -838,33 +839,32 @@
         "usethis",
         "xml2"
       ],
-      "Hash": "c495a916c7f3aba065e09fcaceca4b01"
+      "Hash": "5c76408a283a0b20c6fd455fcd1c44b6"
     },
     "epipredict": {
       "Package": "epipredict",
-      "Version": "0.0.10",
+      "Version": "0.0.13",
       "Source": "GitHub",
+      "Remotes": "cmu-delphi/epidatr, cmu-delphi/epiprocess, dajmcdon/smoothqr",
       "RemoteType": "github",
-      "RemoteUsername": "cmu-delphi",
+      "RemoteHost": "api.github.com",
       "RemoteRepo": "epipredict",
+      "RemoteUsername": "cmu-delphi",
+      "RemotePkgRef": "cmu-delphi/epipredict",
       "RemoteRef": "HEAD",
-      "RemoteSha": "7a4ea55437f6415e86b34d0fb7079ba7e8d5e286",
-      "RemoteHost": "api.github.com",
-      "Remotes": "cmu-delphi/epidatr, cmu-delphi/epiprocess, dajmcdon/smoothqr",
+      "RemoteSha": "8a516e96bbd0d647291700c32da9d4c5182e9f13",
       "Requirements": [
         "R",
         "checkmate",
         "cli",
         "distributional",
         "dplyr",
         "epiprocess",
-        "fs",
         "generics",
+        "ggplot2",
         "glue",
         "hardhat",
-        "lifecycle",
         "magrittr",
-        "methods",
         "parsnip",
         "quantreg",
         "recipes",
@@ -874,26 +874,26 @@
         "tibble",
         "tidyr",
         "tidyselect",
-        "usethis",
+        "tsibble",
         "vctrs",
         "workflows"
       ],
-      "Hash": "d59cd87c1aef1bfb1afce0bbf9b7c9c5"
+      "Hash": "c8f4f260388bc61e562f599c00c73fa6"
     },
     "epiprocess": {
       "Package": "epiprocess",
-      "Version": "0.7.5",
+      "Version": "0.7.7",
       "Source": "GitHub",
+      "Remotes": "cmu-delphi/epidatr, reconverse/outbreaks, glmgen/genlasso",
       "RemoteType": "github",
-      "RemoteUsername": "cmu-delphi",
-      "RemoteRepo": "epiprocess",
-      "RemoteRef": "HEAD",
-      "RemoteSha": "f29654512c4784c5a622b76b0ad13c0b43004d48",
       "RemoteHost": "api.github.com",
-      "Remotes": "cmu-delphi/epidatr, reconverse/outbreaks, glmgen/genlasso",
+      "RemoteRepo": "epiprocess",
+      "RemoteUsername": "cmu-delphi",
+      "RemotePkgRef": "cmu-delphi/epiprocess@ds/r6-clean",
+      "RemoteRef": "ds/r6-clean",
+      "RemoteSha": "dc98f38af3ddfba7b669fca57db2acad686728ce",
       "Requirements": [
         "R",
-        "R6",
         "checkmate",
         "cli",
         "data.table",
@@ -916,7 +916,7 @@
         "utils",
         "vctrs"
       ],
-      "Hash": "d408b669e3b55d445b76272049fdb07e"
+      "Hash": "404be32a2e3ee6f4f4121fa4f3f22841"
     },
     "evaluate": {
       "Package": "evaluate",

scripts/run.R

@@ -61,7 +61,7 @@ tar_manifest()
 if (debug_mode) {
   tar_make(callr_function = NULL, use_crew = FALSE)
 } else {
-  tar_make(use_crew = TRUE)
+  tar_make()
 }
 
 if (use_shiny) {