Merge pull request #470 from cmu-delphi/ndefries/warning-suppression

Suppression noisy test warnings

Author: nmdefries

.Rbuildignore

@@ -14,4 +14,5 @@
 ^Meta$
 ^.git-blame-ignore-revs$
 ^.lintr$
-^DEVELOPMENT.md$
+^DEVELOPMENT.md$
+man-roxygen

DESCRIPTION

@@ -66,7 +66,7 @@ Config/testthat/edition: 3
 Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.3.1
+RoxygenNote: 7.3.2
 Depends:
     R (>= 2.10)
 URL: https://cmu-delphi.github.io/epiprocess/

NAMESPACE

@@ -139,6 +139,7 @@ importFrom(dplyr,slice)
 importFrom(dplyr,tibble)
 importFrom(dplyr,ungroup)
 importFrom(ggplot2,autoplot)
+importFrom(lifecycle,deprecated)
 importFrom(lubridate,as.period)
 importFrom(lubridate,days)
 importFrom(lubridate,weeks)
@@ -188,4 +189,5 @@ importFrom(tidyr,unnest)
 importFrom(tidyselect,eval_select)
 importFrom(tidyselect,starts_with)
 importFrom(tsibble,as_tsibble)
+importFrom(utils,capture.output)
 importFrom(utils,tail)

R/archive.R

@@ -251,6 +251,7 @@ NULL
 #'
 #' @importFrom data.table as.data.table key setkeyv
 #' @importFrom dplyr if_any if_all everything
+#' @importFrom utils capture.output
 #'
 #' @name epi_archive
 #' @export

R/epiprocess.R

@@ -12,4 +12,7 @@
 #' @importFrom rlang %||%
 #' @name epiprocess
 "_PACKAGE"
-utils::globalVariables(c(".x", ".group_key", ".ref_time_value"))
+utils::globalVariables(c(
+  ".x", ".group_key", ".ref_time_value", "resid",
+  "fitted", ".response", "geo_value", "time_value"
+))

R/utils.R

@@ -526,6 +526,8 @@ list2var <- function(x) {
 #' bad_wrapper1 <- function(x) fn(x)
 #' bad_wrapper1() # TRUE, bad
 #'
+#' @importFrom lifecycle deprecated
+#'
 #' @noRd
 deprecated_quo_is_present <- function(quo) {
   if (!rlang::is_quosure(quo)) {