refactor: unify settings and build to pyproject.toml

Author: dshemetov

.dockerignore

@@ -6,7 +6,6 @@ root = true
 
 
 [*]
-
 # Change these settings to your own preference
 indent_style = space
 indent_size = 4
@@ -19,3 +18,6 @@ insert_final_newline = true
 
 [*.md]
 trim_trailing_whitespace = false
+
+[*.yml]
+indent_size = 2

.editorconfig

@@ -0,0 +1,39 @@
+name: ci
+
+on: push
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [3.8]
+    steps:
+      - name: Check out code
+        uses: actions/checkout@v3
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python-version }}
+          cache: "pip"
+      - name: Install Dependencies
+        run: |
+          python -m venv venv
+          source venv/bin/activate
+          pip install -e ".[dev]"
+      - name: Check Formatting
+        run: |
+          source venv/bin/activate
+          inv lint-black
+      - name: Check Linting
+        run: |
+          source venv/bin/activate
+          inv lint-pylint
+      - name: Check Types
+        run: |
+          source venv/bin/activate
+          inv lint-mypy
+      - name: Test
+        run: |
+          source venv/bin/activate
+          inv test

.github/workflows/ci.yaml

@@ -104,7 +104,7 @@ jobs:
           base: dev
           title: "chore: sync main->dev"
           labels: chore
-          # reviewers: 
+          # reviewers:
           assignees: melange396
           body: |
             Syncing Main->Dev.

.github/workflows/ci.yml

@@ -1,10 +1,11 @@
 .mypy_cache
 *.pyc
 __pycache__
-/venv
-/docs/_build
 .coverage
 .pytest_cache
+.DS_Store
 *.egg-info
-/dist
-.DS_Store
+dist/
+build/
+docs/_build
+venv/

.github/workflows/release_helper.yml

@@ -0,0 +1,10 @@
+repos:
+- repo: https://github.com/astral-sh/ruff-pre-commit
+  # Ruff version.
+  rev: v0.5.1
+  hooks:
+      # Run the linter.
+      - id: ruff
+        args: [--fix]
+      # Run the formatter.
+      - id: ruff-format

.gitignore

@@ -12,22 +12,22 @@ Install with the following commands:
 # Latest dev version
 pip install -e "git+https://github.com/cmu-delphi/epidatpy.git#egg=epidatpy"
 
-# PyPI version
+# PyPI version (not yet available)
 pip install epidatpy
 ```
 
 ## Usage
 
 TODO
 
-## Development Environment
+## Development
 
 Prepare virtual environment and install dependencies
 
 ```sh
 python -m venv venv
 source ./venv/bin/activate
-pip install --use-feature=2020-resolver -r requirements.txt -r requirements-dev.txt
+pip install -e ".[dev]"
 ```
 
 ### Common Commands
@@ -44,7 +44,7 @@ inv dist     # build distribution packages
 inv release  # upload the current version to pypi
 ```
 
-## Release Process
+### Release Process
 
 The release consists of multiple steps which can be all done via the GitHub website:
 

.pre-commit-config.yaml

@@ -1,27 +1,52 @@
 """Fetch data from Delphi's API."""
 
+# Make the linter happy about the unused variables
+__all__ = [
+    "get_api_key",
+    "__version__",
+    "CovidcastDataSources",
+    "DataSignal",
+    "DataSignalGeoStatistics",
+    "DataSource",
+    "GeoType",
+    "TimeType",
+    "WebLink",
+    "AEpiDataEndpoints",
+    "AEpiDataCall",
+    "EpiDataFormatType",
+    "EpiDataResponse",
+    "EpiRange",
+    "EpiRangeDict",
+    "EpiRangeLike",
+    "EpiRangeParam",
+    "IntParam",
+    "InvalidArgumentException",
+    "StringParam",
+]
+__author__ = "Delphi Research Group"
+
+
+from ._auth import get_api_key
 from ._constants import __version__
+from ._covidcast import (
+    CovidcastDataSources,
+    DataSignal,
+    DataSignalGeoStatistics,
+    DataSource,
+    GeoType,
+    TimeType,
+    WebLink,
+)
+from ._endpoints import AEpiDataEndpoints
 from ._model import (
+    AEpiDataCall,
+    EpiDataFormatType,
+    EpiDataResponse,
     EpiRange,
     EpiRangeDict,
-    EpiDataResponse,
     EpiRangeLike,
-    InvalidArgumentException,
     EpiRangeParam,
     IntParam,
+    InvalidArgumentException,
     StringParam,
-    EpiDataFormatType,
-    AEpiDataCall,
 )
-from ._covidcast import (
-    DataSignal,
-    DataSource,
-    WebLink,
-    DataSignalGeoStatistics,
-    CovidcastDataSources,
-    GeoType,
-    TimeType,
-)
-from ._auth import get_api_key
-
-__author__ = "Delphi Group"

README.md

@@ -1,6 +1,5 @@
 from typing import Final
 
-
 __version__: Final = "0.5.0"
 HTTP_HEADERS: Final = {"User-Agent": f"epidatpy/{__version__}"}
 BASE_URL: Final = "https://api.delphi.cmu.edu/epidata/"

epidatpy/__init__.py

@@ -1,4 +1,5 @@
 from dataclasses import Field, InitVar, dataclass, field, fields
+from functools import cached_property
 from typing import (
     Any,
     Callable,
@@ -13,21 +14,21 @@
     Sequence,
     Tuple,
     Union,
-    overload,
     get_args,
+    overload,
 )
-from functools import cached_property
+
 from pandas import DataFrame
+
 from ._model import (
-    EpiRangeLike,
     CALL_TYPE,
     EpidataFieldInfo,
     EpidataFieldType,
+    EpiRangeLike,
     EpiRangeParam,
     InvalidArgumentException,
 )
 
-
 GeoType = Literal["nation", "msa", "hrr", "hhs", "state", "county"]
 TimeType = Literal["day", "week"]
 
@@ -119,11 +120,13 @@ class DataSignal(Generic[CALL_TYPE]):
     geo_types: Dict[GeoType, DataSignalGeoStatistics] = field(default_factory=dict)
 
     def __post_init__(self) -> None:
-        self.link = [WebLink(alt=l["alt"], href=l["href"]) if isinstance(l, dict) else l for l in self.link]
+        self.link = [
+            WebLink(alt=link["alt"], href=link["href"]) if isinstance(link, dict) else link for link in self.link
+        ]
         stats_fields = fields(DataSignalGeoStatistics)
         self.geo_types = {
-            k: DataSignalGeoStatistics(**_limit_fields(l, stats_fields)) if isinstance(l, dict) else l
-            for k, l in self.geo_types.items()
+            k: DataSignalGeoStatistics(**_limit_fields(v, stats_fields)) if isinstance(v, dict) else v
+            for k, v in self.geo_types.items()
         }
 
     @staticmethod
@@ -222,7 +225,9 @@ def __post_init__(
         self,
         _create_call: Callable[[Mapping[str, Union[None, EpiRangeLike, Iterable[EpiRangeLike]]]], CALL_TYPE],
     ) -> None:
-        self.link = [WebLink(alt=l["alt"], href=l["href"]) if isinstance(l, dict) else l for l in self.link]
+        self.link = [
+            WebLink(alt=link["alt"], href=link["href"]) if isinstance(link, dict) else link for link in self.link
+        ]
         signal_fields = fields(DataSignal)
         self.signals = [
             DataSignal(_create_call=_create_call, **_limit_fields(s, signal_fields)) if isinstance(s, dict) else s