diff --git a/.bumpversion.cfg b/.bumpversion.cfg index a14bdf434..7585d5fda 100644 --- a/.bumpversion.cfg +++ b/.bumpversion.cfg @@ -1,5 +1,5 @@ [bumpversion] -current_version = 0.3.9 +current_version = 0.3.10 commit = False tag = False diff --git a/docs/api/covid_hosp.md b/docs/api/covid_hosp.md index 400dd4bd2..fd954cc69 100644 --- a/docs/api/covid_hosp.md +++ b/docs/api/covid_hosp.md @@ -29,7 +29,7 @@ Hospital Capacity by State Timeseries](https://healthdata.gov/Hospital/COVID-19- and [COVID-19 Reported Patient Impact and Hospital Capacity by State](https://healthdata.gov/dataset/COVID-19-Reported-Patient-Impact-and-Hospital-Capa/6xf2-c3ie) (published on an irregular schedule, every 1-6 days) - Temporal Resolution: Daily, starting 2020-01-01 - Spatial Resolution: US States plus DC, PR, and VI -- Open access via [Open Data Commons Open Database License (ODbL)](https://opendatacommons.org/licenses/odbl/1.0/) +- Open Access: [Public Domain US Government](https://www.usa.gov/government-works) - Versioned by Delphi according to "issue" date, which is the date that the dataset was published by HHS. diff --git a/docs/api/covid_hosp_facility.md b/docs/api/covid_hosp_facility.md index f85f324d0..f5943b889 100644 --- a/docs/api/covid_hosp_facility.md +++ b/docs/api/covid_hosp_facility.md @@ -24,7 +24,7 @@ This data source provides various measures of COVID-19 burden on patients and he - Geographic resolution: healthcare facility (address, city, zip, fips) - Temporal resolution: weekly (Friday -- Thursday) - First week: 2020-07-31 -- Open access via [Open Data Commons Open Database License (ODbL)](https://opendatacommons.org/licenses/odbl/1.0/) +- Open Access: [Public Domain US Government](https://www.usa.gov/government-works) - Versioned by Delphi according to the date that the dataset was published by HHS. New versions are expected to be published roughly weekly. diff --git a/docs/api/covid_hosp_facility_lookup.md b/docs/api/covid_hosp_facility_lookup.md index 1fea970fe..e0366bccc 100644 --- a/docs/api/covid_hosp_facility_lookup.md +++ b/docs/api/covid_hosp_facility_lookup.md @@ -26,7 +26,7 @@ General topics not specific to any particular data source are discussed in the This data source provides metadata about healthcare facilities in the US. - Data source: [US Department of Health & Human Services](https://healthdata.gov/Hospital/COVID-19-Reported-Patient-Impact-and-Hospital-Capa/anag-cw7u) (HHS) - Total number of facilities: 4922 -- Open access via [Open Data Commons Open Database License (ODbL)](https://opendatacommons.org/licenses/odbl/1.0/) +- Open Access: [Public Domain US Government](https://www.usa.gov/government-works) # The API diff --git a/docs/api/covidcast-signals/dsew-cpr.md b/docs/api/covidcast-signals/dsew-cpr.md index d2d871428..e2dad6c9d 100644 --- a/docs/api/covidcast-signals/dsew-cpr.md +++ b/docs/api/covidcast-signals/dsew-cpr.md @@ -23,10 +23,8 @@ County, MSA, state, and HHS-level values are pulled directly from CPR; nation-le | Signal | Description | | --- | --- | -| `confirmed_admissions_covid_1d_7dav` | Number of adult and pediatric confirmed COVID-19 hospital admissions occurring each day. Smoothed using a 7-day average. -Earliest date available: 2019-12-16 for state, HHS, and nation; 2021-01-06 for MSA and county | -| `confirmed_admissions_covid_1d_prop_7dav` | Number of adult and pediatric confirmed COVID-19 hospital admissions occurring each day, per 100,000 population. Smoothed using a 7-day average. -Earliest date available: 2019-12-16 for state, HHS, and nation; 2021-01-06 for MSA and county | +| `confirmed_admissions_covid_1d_7dav` | Number of adult and pediatric confirmed COVID-19 hospital admissions occurring each day. Smoothed using a 7-day average.
**Earliest date available:** 2019-12-16 for state, HHS, and nation; 2021-01-06 for MSA and county | +| `confirmed_admissions_covid_1d_prop_7dav` | Number of adult and pediatric confirmed COVID-19 hospital admissions occurring each day, per 100,000 population. Smoothed using a 7-day average.
**Earliest date available:** 2019-12-16 for state, HHS, and nation; 2021-01-06 for MSA and county | ## Table of contents {: .no_toc .text-delta} diff --git a/docs/api/covidcast-signals/hhs.md b/docs/api/covidcast-signals/hhs.md index c70b85242..6ef316e37 100644 --- a/docs/api/covidcast-signals/hhs.md +++ b/docs/api/covidcast-signals/hhs.md @@ -13,7 +13,7 @@ grand_parent: COVIDcast Epidata API * **Date of last change:** Never * **Available for:** state, hhs, nation (see [geography coding docs](../covidcast_geography.md)) * **Time type:** day (see [date format docs](../covidcast_times.md)) -* **License:** [Open Data Commons Open Database License (ODbL)](https://opendatacommons.org/licenses/odbl/1-0/) +* **License:** [Public Domain US Government](https://www.usa.gov/government-works) The U.S. Department of Health & Human Services (HHS) publishes several datasets on patient impact and hospital capacity. One of these @@ -112,10 +112,6 @@ is first published. ## Source and Licensing This indicator mirrors and lightly aggregates data originally -published by the U.S. Department of Health & Human Services under an -[Open Data Commons Open Database License -(ODbL)](https://opendatacommons.org/licenses/odbl/1-0/). The ODbL -permits sharing, transformation, and redistribution of data or derived -works so long as all public uses are distributed under the ODbL and -attributed to the source. For more details, consult the official -license text. +published by the U.S. Department of Health & Human Services. +As a work of the US government, the original data is in the +[public domain](https://www.usa.gov/government-works). diff --git a/docs/api/covidcast_signals.md b/docs/api/covidcast_signals.md index 72fd7dee3..b8aa9389d 100644 --- a/docs/api/covidcast_signals.md +++ b/docs/api/covidcast_signals.md @@ -8,47 +8,40 @@ has_children: true # Delphi's COVID-19 Data Sources and Signals Delphi's COVID-19 Surveillance Streams data includes the following data sources. -Data from these sources is expected to be updated daily. You can use the -[`covidcast_meta`](covidcast_meta.md) API endpoint to get summary information +Data from most of these sources is typically updated daily. You can use the +[`covidcast_meta`](covidcast_meta.md) endpoint to get summary information about the ranges of the different attributes for the different data sources. The API for retrieving data from these sources is described in the -[COVIDcast API endpoint documentation](covidcast.md). Changes and corrections to -data in this API are listed in the [API changelog](covidcast_changelog.md). +[COVIDcast endpoint documentation](covidcast.md). Changes and corrections to +data from this endpoint are listed in the [changelog](covidcast_changelog.md). To obtain many of these signals and update them daily, Delphi has written extensive software to obtain data from various sources, aggregate the data, calculate statistical estimates, and format the data to be shared through the -COVIDcast API. This code is [open source and available on -GitHub](https://github.com/cmu-delphi/covidcast-indicators), and contributions -are welcome. +COVIDcast endpoint of the Delphi Epidata API. This code is +[open source and available on GitHub](https://github.com/cmu-delphi/covidcast-indicators), +and contributions are welcome. -## COVIDcast Map Signals +## COVIDcast Dashboard Signals The following signals are currently displayed on [the public COVIDcast -map](https://delphi.cmu.edu/covidcast/) and available in its [data export -tool](https://delphi.cmu.edu/covidcast/export/): +dashboard](https://delphi.cmu.edu/covidcast/): | Kind | Name | Source | Signal | | ---- | ---- | ------ | ------ | -| Public Behavior | At Away Location 6hr+ | [`safegraph`](covidcast-signals/safegraph.md) | `full_time_work_prop_7dav` | -| Public Behavior | At Away Location 3-6hr | [`safegraph`](covidcast-signals/safegraph.md) | `part_time_work_prop_7dav` | -| Public Behavior | Bar Visits | [`safegraph`](covidcast-signals/safegraph.md) | `bars_visit_prop` | -| Public Behavior | Restaurant Visits | [`safegraph`](covidcast-signals/safegraph.md) | `restaurant_visit_prop` | -| Public Behavior | People Wearing Masks | [`fb-survey`](covidcast-signals/fb-survey.md) | `smoothed_wearing_mask_7d` | -| Public Behavior | Vaccine Acceptance | [`fb-survey`](covidcast-signals/fb-survey.md) | `smoothed_covid_vaccinated_or_accept` | -| Public Behavior | COVID Symptom Searches on Google | [`google-symptoms`](covidcast-signals/google-symptoms.md) | `sum_anosmia_ageusia_smoothed_search` | +| Public Behavior | People Wearing Masks | [`fb-survey`](covidcast-signals/fb-survey.md) | `smoothed_wwearing_mask_7d` | +| Public Behavior | Vaccine Acceptance | [`fb-survey`](covidcast-signals/fb-survey.md) | `smoothed_wcovid_vaccinated_appointment_or_accept` | +| Public Behavior | COVID Symptom Searches on Google | [`google-symptoms`](covidcast-signals/google-symptoms.md) | `sum_anosmia_ageusia_smoothed_search` | +| Early Indicators | COVID-Like Symptoms | [`fb-survey`](covidcast-signals/fb-survey.md) | `smoothed_wcli` | +| Early Indicators | COVID-Like Symptoms in Community | [`fb-survey`](covidcast-signals/fb-survey.md) | `smoothed_whh_cmnty_cli` | | Early Indicators | COVID-Related Doctor Visits | [`doctor-visits`](covidcast-signals/doctor-visits.md) | `smoothed_adj_cli` | -| Early Indicators | COVID-Like Symptoms | [`fb-survey`](covidcast-signals/fb-survey.md) | `smoothed_cli` | -| Early Indicators | COVID-Like Symptoms in Community | [`fb-survey`](covidcast-signals/fb-survey.md) | `smoothed_hh_cmnty_cli` | -| Late Indicators | COVID Antigen Test Positivity (Quidel) | [`quidel`](covidcast-signals/quidel.md) | `covid_ag_smoothed_pct_positive` | -| Late Indicators | Claims-Based COVID Hospital Admissions | [`hospital-admissions`](covidcast-signals/hospital-admissions.md) | `smoothed_adj_covid19_from_claims` | -| Late Indicators | Cases | [`jhu-csse`](covidcast-signals/jhu-csse.md) | `confirmed_7dav_incidence_num` | -| Late Indicators | Cases per 100,000 People | [`jhu-csse`](covidcast-signals/jhu-csse.md) | `confirmed_7dav_incidence_prop` | -| Late Indicators | Deaths | [`jhu-csse`](covidcast-signals/jhu-csse.md) | `deaths_7dav_incidence_num` | -| Late Indicators | Deaths per 100,000 People | [`jhu-csse`](covidcast-signals/jhu-csse.md) | `deaths_7dav_incidence_prop` | +| Cases and Testing| COVID Antigen Test Positivity (Quidel) | [`quidel`](covidcast-signals/quidel.md) | `covid_ag_smoothed_pct_positive` | +| Cases and Testing| COVID Cases | [`jhu-csse`](covidcast-signals/jhu-csse.md) | `confirmed_7dav_incidence_prop` | +| Late Indicators | COVID Hospital Admissions | [`hhs`](covidcast-signals/hhs.md) | `confirmed_admissions_covid_1d_prop_7dav` | +| Late Indicators | Deaths | [`jhu-csse`](covidcast-signals/jhu-csse.md) | `deaths_7dav_incidence_prop` | ## All Available Sources and Signals -Beyond the signals available on the COVIDcast map, numerous other signals are -available directly through the API: +Beyond the signals available on the COVIDcast dashboard, numerous other signals are +available through our [data export tool](https://delphi.cmu.edu/covidcast/export/) or directly through the API: diff --git a/docs/symptom-survey/coding.md b/docs/symptom-survey/coding.md index a8eac15b9..a7fdb04b7 100644 --- a/docs/symptom-survey/coding.md +++ b/docs/symptom-survey/coding.md @@ -965,6 +965,11 @@ vaccination questions to collect information about additional doses and booster shots. We also removed questions that are not being used to reduce response burden. +Files: + +* [Wave 13 text and coding](waves/CTIS US Wave 13.pdf) (PDF) +* [Wave 13 text and coding](waves/CTIS US Wave 13.docx) (Word) + ### New Items * Introductory text was added for respondents that responded “yes” to item V2, diff --git a/docs/symptom-survey/waves/CTIS US Wave 13.docx b/docs/symptom-survey/waves/CTIS US Wave 13.docx new file mode 100644 index 000000000..ff132d7f0 Binary files /dev/null and b/docs/symptom-survey/waves/CTIS US Wave 13.docx differ diff --git a/docs/symptom-survey/waves/CTIS US Wave 13.pdf b/docs/symptom-survey/waves/CTIS US Wave 13.pdf new file mode 100644 index 000000000..065faa191 Binary files /dev/null and b/docs/symptom-survey/waves/CTIS US Wave 13.pdf differ diff --git a/src/client/delphi_epidata.R b/src/client/delphi_epidata.R index cd8f91924..30aff82ba 100644 --- a/src/client/delphi_epidata.R +++ b/src/client/delphi_epidata.R @@ -15,7 +15,7 @@ Epidata <- (function() { # API base url BASE_URL <- 'https://delphi.cmu.edu/epidata/api.php' - client_version <- '0.3.9' + client_version <- '0.3.10' # Helper function to cast values and/or ranges to strings .listitem <- function(value) { diff --git a/src/client/delphi_epidata.js b/src/client/delphi_epidata.js index 8fee22ead..92040aa40 100644 --- a/src/client/delphi_epidata.js +++ b/src/client/delphi_epidata.js @@ -22,7 +22,7 @@ } })(this, function (exports, fetchImpl, jQuery) { const BASE_URL = "https://delphi.cmu.edu/epidata/"; - const client_version = "0.3.9"; + const client_version = "0.3.10"; // Helper function to cast values and/or ranges to strings function _listitem(value) { diff --git a/src/client/packaging/npm/package.json b/src/client/packaging/npm/package.json index df67c1f7c..86fb7a9ad 100644 --- a/src/client/packaging/npm/package.json +++ b/src/client/packaging/npm/package.json @@ -2,7 +2,7 @@ "name": "delphi_epidata", "description": "Delphi Epidata API Client", "authors": "Delphi Group", - "version": "0.3.9", + "version": "0.3.10", "license": "MIT", "homepage": "https://github.com/cmu-delphi/delphi-epidata", "bugs": { diff --git a/src/client/packaging/pypi/delphi_epidata/__init__.py b/src/client/packaging/pypi/delphi_epidata/__init__.py index 4a28a0fd3..987440a6f 100644 --- a/src/client/packaging/pypi/delphi_epidata/__init__.py +++ b/src/client/packaging/pypi/delphi_epidata/__init__.py @@ -1,4 +1,4 @@ from .delphi_epidata import Epidata name = 'delphi_epidata' -__version__ = '0.3.9' +__version__ = '0.3.10' diff --git a/src/client/packaging/pypi/setup.py b/src/client/packaging/pypi/setup.py index 31fbd7f0b..01bce7e6f 100644 --- a/src/client/packaging/pypi/setup.py +++ b/src/client/packaging/pypi/setup.py @@ -5,7 +5,7 @@ setuptools.setup( name="delphi_epidata", - version="0.3.9", + version="0.3.10", author="David Farrow", author_email="dfarrow0@gmail.com", description="A programmatic interface to Delphi's Epidata API.", diff --git a/src/server/_config.py b/src/server/_config.py index 29341b307..48dc86441 100644 --- a/src/server/_config.py +++ b/src/server/_config.py @@ -5,7 +5,7 @@ load_dotenv() -VERSION = "0.3.9" +VERSION = "0.3.10" MAX_RESULTS = int(10e6) MAX_COMPATIBILITY_RESULTS = int(3650)