updated the workflow to use the latest version of the actions/checkout action and ensure that the code is checked out correctly for each repository. (#1262)

* The changes made in this commit include:
- Updated the version of the `actions/checkout` action from `v2` to `v3` in the `.github/workflows/ci.yaml` file.
- Modified the checkout step for multiple repositories to use the `actions/checkout@v3` action.
- Updated the checkout step for the `src/client/packaging/npm` directory to use the `actions/checkout@v3` action.
- Updated the checkout step for the code in the `jobs.build` section to use the `actions/checkout@v3` action.
- Added a step to set the output variables `tag` and `repo` in the `jobs.build` section.

These changes update the workflow to use the latest version of the `actions/checkout` action and ensure that the code is checked out correctly for each repository.

* The changes made in this commit include:
- Updated the version of the `actions/checkout` action from `v2` to `v3` in the `.github/workflows/create-release.yml`, `.github/workflows/missing_signals.yaml`, `.github/workflows/release-helper.yml`, and `.github/workflows/update_gdocs_data.yml` files.
- Updated the version of the `actions/setup-python` action from `v2` to `v4` in the `.github/workflows/create-release.yml`, `.github/workflows/missing_signals.yaml`, `.github/workflows/release-helper.yml`, and `.github/workflows/update_gdocs_data.yml` files.
- Removed the line `echo -n "::set-output name=next_tag::"` and replaced it with `echo -n $next_tag >> $GITHUB_OUTPUT` in the `.github/workflows/create-release.yml` file.
- Removed the line `echo -n "::set-output name=version::"` and replaced it with `echo -n $version >> $GITHUB_OUTPUT` in the `.github/workflows/release-helper.yml` file.

Author: BrainIsDead

.github/workflows/ci.yaml

@@ -7,44 +7,44 @@ jobs:
     steps:
       - run: mkdir -p repos/undefx
       - name: Checkout undefx/py3tester
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           repository: undefx/py3tester
           path: repos/undefx/py3tester
       - name: Checkout undefx/undef-analysis
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           repository: undefx/undef-analysis
           path: repos/undefx/undef-analysis
 
       - run: mkdir -p repos/delphi
 
       - name: Checkoutcmu-delphi/operations
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           repository: cmu-delphi/operations
           path: repos/delphi/operations
       - name: Checkout cmu-delphi/utils
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           repository: cmu-delphi/utils
           path: repos/delphi/utils
       - name: Checkout cmu-delphi/github-deploy-repo
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           repository: cmu-delphi/github-deploy-repo
           path: repos/delphi/github-deploy-repo
       - name: Checkout THIS REPO
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           path: repos/delphi/delphi-epidata
       - name: Checkout cmu-delphi/flu-contest
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           repository: cmu-delphi/flu-contest
           path: repos/delphi/flu-contest
       - name: Checkout cmu-delphi/nowcast
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           repository: cmu-delphi/nowcast
           path: repos/delphi/nowcast
@@ -98,7 +98,7 @@ jobs:
         working-directory: src/client/packaging/npm
     steps:
       - name: Checkout
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
       - uses: actions/setup-node@v2
         with:
           node-version: '14.x'
@@ -121,7 +121,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out code
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
       - name: Login to GitHub Container Registry
         uses: docker/login-action@v1
         with:
@@ -141,8 +141,8 @@ jobs:
           if [ "$imageTag" = "main" ] ; then
             imageTag="latest"
           fi
-          echo "::set-output name=tag::$imageTag"
-          echo "::set-output name=repo::ghcr.io/${{ github.repository }}"
+          echo "tag=$imageTag" >> "$GITHUB_OUTPUT"
+          echo "repo=ghcr.io/${{ github.repository }}" >> "$GITHUB_OUTPUT"
       - name: Push Dev Tag
         run: |
           docker tag repo ${{ steps.tagname.outputs.repo }}:${{ steps.tagname.outputs.tag }}

.github/workflows/create-release.yml

@@ -13,7 +13,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out code
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           ref: main
           ssh-key: ${{ secrets.CMU_DELPHI_DEPLOY_MACHINE_SSH }}
@@ -22,14 +22,14 @@ jobs:
           git fetch origin dev:dev
           git reset --hard origin/dev
       - name: Set up Python 3.8
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: 3.8
       - name: Change version number
         id: version
         run: |
           python -m pip install bump2version
-          echo -n "::set-output name=next_tag::"
+          echo -n $next_tag >> $GITHUB_OUTPUT
           bump2version --list ${{ github.event.inputs.versionName }} | grep new_version | sed -r s,"^.*=",,
       - name: Create pull request into prod
         uses: peter-evans/create-pull-request@v3

.github/workflows/missing_signals.yaml

@@ -8,11 +8,11 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out code
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           ref: dev
       - name: Set up Python 3.8
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: 3.8
       - name: Install Dependencies

.github/workflows/release-helper.yml

@@ -18,18 +18,18 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out code
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           ssh-key: ${{ secrets.CMU_DELPHI_DEPLOY_MACHINE_SSH }}
       - name: Set up Python 3.8
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: 3.8
       - name: Extract version
         id: extract_version
         run: |
           python -m pip install bump2version
-          echo -n "::set-output name=version::"
+          echo -n $version >> $GITHUB_OUTPUT
           bump2version --dry-run --list patch | grep ^current_version | sed -r s,"^.*=",,
       - name: Create Release
         id: create_release

.github/workflows/update_gdocs_data.yml

@@ -6,12 +6,12 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Check out code
-        uses: actions/checkout@v2
+        uses: actions/checkout@v3
         with:
           branch: dev
           ssh-key: ${{ secrets.CMU_DELPHI_DEPLOY_MACHINE_SSH }}
       - name: Set up Python 3.8
-        uses: actions/setup-python@v2
+        uses: actions/setup-python@v4
         with:
           python-version: 3.8
       - uses: actions/cache@v2