Skip to content

Commit a36c1e3

Browse files
tinatownesnmdefries
tinatownes
and
nmdefries
authored
Doc site menu reorganization (#1500)
* move inactive signals to main signal list Combine inactive quidel and active quidel. Rename "Other Endpoints". Developer support section creation and organization. * page nav order; non-signal helper page updates * Edits to doc page menu * new endpoint cleanup * rename high-level pages * api client and quidel page renaming * rename covidcast endpoint page * other endpoints data source intro * move other endpoints to nested data sources menu * move "inactive" to beginning of signal menu titles * increase nav order of a couple inactive signals * increase nav order of inactive signals, and prefix with "inactive" * put inactive prefix in italics * remove "covidcast" from licensing page title * fix broken links; switch em to i for italics * move covidcast metadata to top of signals list * italicize inactive prefix for CTIS * update CTIS pages' parents --------- Co-authored-by: Tina Townes <[email protected]> Co-authored-by: Nat DeFries <[email protected]>
1 parent 887eb7d commit a36c1e3

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

81 files changed

+492
-360
lines changed

‎docs/about_delphi.md

Lines changed: 15 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,15 @@
1+
---
2+
title: About Delphi
3+
nav_order: 60
4+
has_children: false
5+
---
6+
7+
# About The Delphi Group
8+
9+
The Delphi Group's mission is to develop the theory and practice of epidemic detection, tracking and forecasting, and their use in decision making, both public and private.
10+
11+
Our vision is to make this technology as useful as weather forecasting is today.
12+
13+
Find out more about the Delphi Research Group on our <a href="https://delphi.cmu.edu" target="_blank">offical webpage</a>.
14+
Please read our <a href="https://delphi.cmu.edu/blog" target="_blank">blog</a> for additional news, findings, and musings from the team.
15+

‎docs/api/README.md

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
11
---
22
title: Other Endpoints (COVID-19 and Other Diseases)
3-
nav_order: 3
43
has_children: true
4+
nav_order: 3
55
---
66

77
# Other Endpoints (COVID-19 and Other Diseases)
@@ -208,4 +208,4 @@ To access our Epidata API, visit our [Epidata API Client Libraries)](client_libr
208208

209209
# Related Work
210210

211-
Please visit our [related works](related_work.md) page for more information.
211+
Please visit our [related works](../related_work.md) page for more information.

‎docs/api/api_keys.md

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
11
---
22
title: API Keys
3+
parent: Epidata API Intro
34
nav_order: 1
4-
has_children: true
55
---
66

77
# Epidata API Keys

‎docs/api/cdc.md

Lines changed: 4 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,8 @@
11
---
2-
title: CDC
3-
parent: Other Endpoints (COVID-19 and Other Diseases)
2+
title: <i>inactive</i> CDC
3+
parent: Data Sources and Signals
4+
grand_parent: Other Endpoints (COVID-19 and Other Diseases)
5+
nav_order: 2
46
---
57

68
# CDC

‎docs/api/client_libraries.md

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,18 +1,18 @@
11
---
2-
title: Epidata API Client Libraries
2+
title: API Clients
33
parent: Other Endpoints (COVID-19 and Other Diseases)
44
nav_order: 1
55
---
66

7-
# Epidata API Client Libraries
7+
# Epidata API Clients
88

99
To access Delphi Epidata programmatically, we recommend our client libraries:
1010

1111
- R: [epidatr](https://cmu-delphi.github.io/epidatr/),
1212
- Python: [delphi-epidata](https://pypi.org/project/delphi-epidata/) (soon to be replaced with [epidatpy](https://github.com/cmu-delphi/epidatpy)),
1313
- Javascript: [delphi-epidata](https://github.com/cmu-delphi/delphi-epidata/blob/master/src/client/delphi_epidata.js).
1414

15-
For anyone looking for COVIDCast data, please visit our [COVIDCast Libraries](covidcast_clients.md).
15+
For anyone looking for COVIDCast data, please visit our [COVIDCast API Client Libraries](covidcast_clients.md).
1616

1717
The following samples show how to import the library and fetch Delphi's
1818
COVID-19 Surveillance Streams from Facebook Survey CLI for county 06001 and days

‎docs/api/covid_hosp.md

Lines changed: 4 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,8 @@
11
---
2-
title: COVID-19 Reported Patient Impact and Hospital Capacity by State Timeseries
3-
parent: Other Endpoints (COVID-19 and Other Diseases)
2+
title: <i>inactive</i> COVID-19 Reported Patient Impact and Hospital Capacity by State Timeseries
3+
parent: Data Sources and Signals
4+
grand_parent: Other Endpoints (COVID-19 and Other Diseases)
5+
nav_order: 2
46
---
57

68
# COVID-19 Hospitalization by State

‎docs/api/covid_hosp_facility.md

Lines changed: 4 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,8 @@
11
---
2-
title: COVID-19 Reported Patient Impact and Hospital Capacity by Facility
3-
parent: Other Endpoints (COVID-19 and Other Diseases)
2+
title: <i>inactive</i> COVID-19 Reported Patient Impact and Hospital Capacity by Facility
3+
parent: Data Sources and Signals
4+
grand_parent: Other Endpoints (COVID-19 and Other Diseases)
5+
nav_order: 2
46
---
57

68
# COVID-19 Hospitalization by Facility

‎docs/api/covid_hosp_facility_lookup.md

Lines changed: 4 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,8 @@
11
---
2-
title: COVID-19 Reported Patient Impact and Hospital Capacity - Facility lookup
3-
parent: Other Endpoints (COVID-19 and Other Diseases)
2+
title: <i>inactive</i> COVID-19 Reported Patient Impact and Hospital Capacity - Facility lookup
3+
parent: Data Sources and Signals
4+
grand_parent: Other Endpoints (COVID-19 and Other Diseases)
5+
nav_order: 2
46
---
57

68
# COVID-19 Hospitalization: Facility Lookup

‎docs/api/covidcast-signals/_source-template.md

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
11
---
22
title: SOURCE NAME
33
parent: Data Sources and Signals
4-
grand_parent: COVIDcast Main Endpoint
4+
grand_parent: Main Endpoint (COVIDcast)
55
---
66

77
# SOURCE NAME

‎docs/api/covidcast-signals/chng.md

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
22
title: Change Healthcare
33
parent: Data Sources and Signals
4-
grand_parent: COVIDcast Main Endpoint
4+
grand_parent: Main Endpoint (COVIDcast)
5+
nav_order: 1
56
---
67

78
# Change Healthcare

‎docs/api/covidcast-signals/covid-act-now.md

Lines changed: 4 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
2-
title: COVID Act Now
3-
parent: Inactive Signals
4-
grand_parent: COVIDcast Main Endpoint
2+
title: <i>inactive</i> COVID Act Now
3+
parent: Data Sources and Signals
4+
nav_order: 2
5+
grand_parent: Main Endpoint (COVIDcast)
56
---
67

78
# COVID Act Now (CAN)

‎docs/api/covidcast-signals/doctor-visits.md

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
22
title: Doctor Visits
33
parent: Data Sources and Signals
4-
grand_parent: COVIDcast Main Endpoint
4+
grand_parent: Main Endpoint (COVIDcast)
5+
nav_order: 1
56
---
67

78
# Doctor Visits

‎docs/api/covidcast-signals/dsew-cpr.md

Lines changed: 4 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
2-
title: Data Strategy and Execution Workgroup Community Profile Report
3-
parent: Inactive Signals
4-
grand_parent: COVIDcast Main Endpoint
2+
title: <i>inactive</i> Data Strategy and Execution Workgroup Community Profile Report
3+
parent: Data Sources and Signals
4+
nav_order: 2
5+
grand_parent: Main Endpoint (COVIDcast)
56
---
67

78
# Data Strategy and Execution Workgroup Community Profile Report (CPR)

‎docs/api/covidcast-signals/fb-survey.md

Lines changed: 5 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -1,10 +1,11 @@
11
---
2-
title: COVID-19 Trends and Impact Survey
3-
parent: Inactive Signals
4-
grand_parent: COVIDcast Main Endpoint
2+
title: <i>inactive</i> COVID-19 Trends and Impact Survey
3+
parent: Data Sources and Signals
4+
grand_parent: Main Endpoint (COVIDcast)
5+
nav_order: 2
56
---
67

7-
# COVID-19 Trends and Impact Survey
8+
# COVID-19 Trends and Impact Survey 2020-2022 (Facebook Survey)
89
{: .no_toc}
910

1011
* **Source name:** `fb-survey`

‎docs/api/covidcast-signals/ght.md

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
22
title: Google Health Trends
33
parent: Inactive Signals
4-
grand_parent: COVIDcast Main Endpoint
4+
nav_order: 2
5+
grand_parent: Main Endpoint (COVIDcast)
56
---
67

78
# Google Health Trends

‎docs/api/covidcast-signals/google-survey.md

Lines changed: 7 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
2-
title: Google Symptom Surveys
3-
parent: Inactive Signals
4-
grand_parent: COVIDcast Main Endpoint
2+
title: <i>inactive</i> Google Symptom Surveys
3+
parent: Data Sources and Signals
4+
grand_parent: Main Endpoint (COVIDcast)
5+
nav_order: 2
56
---
67

78
# Google Symptom Surveys
@@ -25,7 +26,7 @@ is sick (fever, along with cough, or shortness of breath, or difficulty
2526
breathing) right now?" Using this survey data, we estimate the percentage of
2627
people in a given location, on a given day, that *know somebody who has a
2728
COVID-like illness*. This estimates a similar quantity to the `*_cmnty_cli`
28-
signals from the [Symptom Surveys](fb-survey.md) (`fb-survey`) source, but using
29+
signals from the [COVID-19 Trends and Impact Survey](fb-survey.md) (`fb-survey`) source, but using
2930
a different survey population and recruitment method.
3031

3132
The survey sampled from all counties with greater than 100,000 population, along
@@ -263,12 +264,12 @@ probabilities and contribute variance.
263264

264265
### Smoothing
265266

266-
Additionally, as with the Facebook surveys, we consider estimates formed by
267+
Additionally, as with the COVID-19 Trends and Impact Survey, we consider estimates formed by
267268
pooling data over time. That is, daily, for each location, we first pool all
268269
data available in that location over the last 5 days, and compute the estimates
269270
given above using all five days of data.
270271

271-
In contrast to the Facebook surveys, this pooling does not significantly change
272+
In contrast to the COVID-19 Trends and Impact Survey, this pooling does not significantly change
272273
the availability of estimates, because of our stratified sampling procedure
273274
(essentially always) delivers sufficient data at the county level---at least 100
274275
survey responses---to warrant their own estimates. However, the pooling

‎docs/api/covidcast-signals/google-symptoms.md

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
2-
title: Google Search Trends symptoms dataset
2+
title: <i>inactive</i> Google Search Trends Symptoms
33
parent: Data Sources and Signals
4-
grand_parent: COVIDcast Main Endpoint
4+
nav_order: 2
5+
grand_parent: Main Endpoint (COVIDcast)
56
---
67

78
# Google Symptoms

‎docs/api/covidcast-signals/hhs.md

Lines changed: 4 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
2-
title: Department of Health & Human Services
3-
parent: Inactive Signals
4-
grand_parent: COVIDcast Main Endpoint
2+
title: <i>inactive</i> Department of Health & Human Services
3+
parent: Data Sources and Signals
4+
nav_order: 2
5+
grand_parent: Main Endpoint (COVIDcast)
56
---
67

78
# Department of Health & Human Services

‎docs/api/covidcast-signals/hospital-admissions.md

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
22
title: Hospital Admissions
33
parent: Data Sources and Signals
4-
grand_parent: COVIDcast Main Endpoint
4+
grand_parent: Main Endpoint (COVIDcast)
5+
nav_order: 1
56
---
67

78
# Hospital Admissions

‎docs/api/covidcast-signals/indicator-combination.md

Lines changed: 4 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
2-
title: Indicator Combination
3-
parent: Inactive Signals
4-
grand_parent: COVIDcast Main Endpoint
2+
title: <i>inactive</i> Indicator Combination
3+
parent: Data Sources and Signals
4+
grand_parent: Main Endpoint (COVIDcast)
5+
nav_order: 2
56
---
67

78
# Indicator Combination

‎docs/api/covidcast-signals/jhu-csse.md

Lines changed: 4 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
2-
title: JHU Cases and Deaths
3-
parent: Inactive Signals
4-
grand_parent: COVIDcast Main Endpoint
2+
title: <i>inactive</i> JHU Cases and Deaths
3+
parent: Data Sources and Signals
4+
nav_order: 2
5+
grand_parent: Main Endpoint (COVIDcast)
56
---
67

78
# JHU Cases and Deaths

‎docs/api/covidcast-signals/nchs-mortality.md

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
22
title: NCHS Mortality Data
33
parent: Data Sources and Signals
4-
grand_parent: COVIDcast Main Endpoint
4+
grand_parent: Main Endpoint (COVIDcast)
5+
nav_order: 1
56
---
67

78
# NCHS Mortality Data

‎docs/api/covidcast-signals/nssp.md

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,8 @@
11
---
22
title: NSSP ED Visits
33
parent: Data Sources and Signals
4-
grand_parent: COVIDcast Main Endpoint
4+
grand_parent: Main Endpoint (COVIDcast)
5+
nav_order: 1
56
---
67
# National Syndromic Surveillance Program Emergency Department Visits
78
{: .no_toc}

‎docs/api/covidcast-signals/quidel-flu.md

Lines changed: 0 additions & 53 deletions
This file was deleted.

0 commit comments

Comments
 (0)