fix: backfill Dockerfile

Author: dshemetov

backfill_corrections/Dockerfile

@@ -15,16 +15,13 @@ ENV LD_LIBRARY_PATH $GUROBI_HOME/lib
 RUN ln -s -f /usr/share/zoneinfo/America/New_York /etc/localtime
 
 RUN apt-get update && apt-get install -qq -y \
-    libudunits2-dev \
-    libgdal-dev \
-    libgeos-dev \
-    libproj-dev \
-    libglpk-dev \
+    apt-file \
     python3-venv \
     python3-dev \
     python3-pip
 
-RUN R -e 'install.packages(c("pak", "rspm"))'
+RUN R -e 'install.packages("pak", repos = sprintf("https://r-lib.github.io/p/pak/stable/%s/%s/%s", .Platform$pkgType, R.Version()$os, R.Version()$arch))'
+RUN R -e 'install.packages(c("rspm"))'
 RUN --mount=type=secret,id=GITHUB_TOKEN \
     export GITHUB_PAT="$(cat /run/secrets/GITHUB_TOKEN)" && \
     R -e 'rspm::enable(); pak::pkg_install(c("roxygen2", "Rglpk", "argparser", "gfkse/[email protected]", "cmu-delphi/covidcast/R-packages/evalcast@evalcast", "ryantibs/quantgen/quantgen"))'