Merge pull request #266 from cmu-delphi/deploy-safegraph

Merge the SafeGraph deployment branch updates to main

Author: krivard

ansible/templates/safegraph-params-prod.json.j2

@@ -0,0 +1,12 @@
+{
+  "static_file_dir": "./static",
+  "raw_data_dir": "/common/safegraph",
+  "export_dir": "./receiving",
+  "cache_dir": "./cache",
+  "n_core": "12",
+  "aws_access_key_id": "{{ safegraph_aws_access_key_id }}",
+  "aws_secret_access_key": "{{ safegraph_aws_secret_access_key }}",
+  "aws_default_region": "us-east-1",
+  "aws_endpoint": "https://s3.wasabisys.com",
+  "wip_signal": ""
+}

ansible/vars.yaml

@@ -11,4 +11,5 @@ pyenv_python_path: "/home/{{ runtime_user }}/.pyenv/versions/{{ python_version }
 google_health_api_key: "{{ vault_google_health_api_key }}"
 delphi_aws_access_key_id: "{{ vault_delphi_aws_access_key_id }}"
 delphi_aws_secret_access_key: "{{ vault_delphi_aws_secret_access_key }}"
-
+safegraph_aws_access_key_id: "{{ vault_safegraph_aws_access_key_id }}"
+safegraph_aws_secret_access_key: "{{ vault_safegraph_aws_secret_access_key }}"

ansible/vault.yaml

@@ -1,16 +1,22 @@
 $ANSIBLE_VAULT;1.1;AES256
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jenkins/safegraph-jenkins-build.sh

@@ -0,0 +1,21 @@
+#!/usr/bin/env bash
+#
+# JHU: Jenkins build
+#
+
+set -eo pipefail
+source ~/.bash_profile
+
+#
+# Build
+#
+
+local_indicator="safegraph"
+
+cd "${WORKSPACE}/${local_indicator}" || exit
+
+# Set up venv
+python -m venv env
+source env/bin/activate
+pip install ../_delphi_utils_python/.
+pip install .

jenkins/safegraph-jenkins-deploy.sh

@@ -0,0 +1,18 @@
+#!/usr/bin/env bash
+#
+# Jenkins deploy
+#
+
+set -eo pipefail
+source ~/.bash_profile
+
+#
+# Deploy
+#
+
+local_indicator="safegraph"
+
+cd "${WORKSPACE}/ansible" || exit
+
+# Ansible!
+ansible-playbook ansible-deploy.yaml --extra-vars "indicator=${local_indicator}" -i inventory

jenkins/safegraph-jenkins-package.sh

@@ -0,0 +1,18 @@
+#!/usr/bin/env bash
+#
+# Jenkins package
+#
+
+set -eo pipefail
+source ~/.bash_profile
+
+#
+# Package
+#
+
+local_indicator="safegraph"
+
+cd "${WORKSPACE}" || exit
+
+# Create .tar.gz for deployment
+tar -czvf "${JENKINS_HOME}/artifacts/${local_indicator}.tar.gz" "${local_indicator}"

jenkins/safegraph-jenkins-test.sh

@@ -0,0 +1,22 @@
+#!/usr/bin/env bash
+#
+# JHU: Jenkins test
+#
+
+set -eo pipefail
+source ~/.bash_profile
+
+#
+# Test
+#
+
+local_indicator="safegraph"
+
+cd "${WORKSPACE}/${local_indicator}" || exit
+
+# Linter
+env/bin/pylint --disable=C --disable=W --disable=R delphi_"${local_indicator}"
+
+# Unit tests and code coverage
+cd tests || exit && \
+  ../env/bin/pytest --cov=delphi_"${local_indicator}" --cov-report=term-missing

safegraph/run-safegraph.sh

@@ -0,0 +1,20 @@
+#!/usr/bin/env bash
+#
+# Run the Safegraph indicator
+#
+
+#set -eo pipefail
+
+# Purge the receiving directory.
+echo "Purging ./receiving..."
+rm -f ./receiving/*
+
+# Run the indicator code.
+echo "Running the indicator..."
+env/bin/python -m delphi_safegraph
+
+# Copy the files to the ingestion directory.
+echo "Copying files to the ingestion directory..."
+# Hack to make cp care less about missing recent files since we don't always have them.
+cp $(date +"receiving/%Y%m*") /common/covidcast/receiving/safegraph 2>/dev/null
+cp $(date --date='-1 month' +"receiving/%Y%m*") /common/covidcast/receiving/safegraph