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Fix missing names and permissions in new install process
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src/setup/load.sh

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -31,9 +31,10 @@ if compgen -G "$SOURCE"/*.processed.gff; then
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--trackLabel Regulatory_build \
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--out "$DESTINATION"
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fi
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"$JBROWSE_BIN/generate-names.pl" --out "$DESTINATION"
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cp "$TARGET" "$DESTINATION/trackList.json"
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echo -e "[general]\ndataset_id = $ASSEMBLY" > "$DESTINATION/tracks.conf"
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echo -e "[datasets.$ASSEMBLY]\nurl = ?data=data/$ASSEMBLY\nname = $SPECIES ($ASSEMBLY)\n\n" >> jbrowse/jbrowse.conf
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touch "$DESTINATION/gRNA_CRISPR.gff"
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touch "$DESTINATION/acceptedPrimers.gff"
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touch "$DESTINATION/gRNA_CRISPR.gff" "$DESTINATION/acceptedPrimers.gff"
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chown www-data:www-data "$DESTINATION/gRNA_CRISPR.gff" "$DESTINATION/acceptedPrimers.gff"

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