removed print statements

Author: NourHanafi

src/guide-finder/core/score_offtargets.py

@@ -59,24 +59,24 @@ def inDelphiScore(guideDict,genome_fa,twoBitToFa_path,genome_2bit,tempfiles_path
 		#TODO: NEED TO REPLACE NEXT LINE
 		# the last term should be replaced with ~20 bps after the cutsite
 		# get this via the get_sequence code
-		print(guide['guide_seq'])
+		#print(guide['guide_seq'])
 
 		cleavePos=int(str(cleaves)[2:-2])
-		print(cleavePos)
+		#print(cleavePos)
 		#get strand
-		print(guide['strand'])
+		#print(guide['strand'])
 		#apply strand logic to coordinates before submitting to get_sequence.py
 		if guide['strand'] == "+":
 			coords=str("%s:%s-%s"%(guide['pam_chrom'],guide['guide_genomic_start'],(guide['pam_genomic_start']+cleavePos+20)))
 		elif guide['strand'] == "-":
 			coords=str("%s:%s-%s"%(guide['pam_chrom'],(guide['pam_genomic_start']-len(guide['guide_seq'])+3),(guide['pam_genomic_start']+1+cleavePos+22)))
 #		coords=str("%s:%s-%s"%(guide['pam_chrom'],guide['guide_genomic_start'],(guide['pam_genomic_start']+cleavePos+20)))
 
-		print(coords)
+		#print(coords)
 
 		timestr = time.strftime("%Y%m%d-%H%M%S")
 		getseq=str(get_sequence.fetch_sequence(twoBitToFa_path, coords, genome_2bit, os.path.join(tempfiles_path,timestr+'_out.fa')))
-		print(os.path.join(tempfiles_path,timestr+'_out.fa'))
+		#print(os.path.join(tempfiles_path,timestr+'_out.fa'))
 
 		#get flanking sequence before and after cutsite
 		fullSeq = ''
@@ -99,7 +99,7 @@ def inDelphiScore(guideDict,genome_fa,twoBitToFa_path,genome_2bit,tempfiles_path
   			fullSeq = "".join(list(reversed(fullSeq))).translate(translate_code)
 
 		cutsite = len(guide['guide_seq']) + cleavePos
-		print(fullSeq)
+		#print(fullSeq)
 
 		pred_df, stats = inDelphi.predict(fullSeq, cutsite)
 		guide['Precision'] = round(stats['Precision'],2)