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Bump JBrowse patch version
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@@ -33,11 +33,10 @@ RUN curl -Lo /usr/local/bin/dicey https://github.com/gear-genomics/dicey/release
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RUN curl -Lo /usr/local/bin/faToTwoBit https://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/faToTwoBit \
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-Lo /usr/local/bin/twoBitToFa https://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/twoBitToFa && \
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chmod +x /usr/local/bin/faToTwoBit /usr/local/bin/twoBitToFa
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ARG JBROWSE_VERSION=1.12.3
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RUN curl -LO https://jbrowse.org/releases/JBrowse-${JBROWSE_VERSION}/JBrowse-${JBROWSE_VERSION}.zip && \
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unzip JBrowse-${JBROWSE_VERSION}.zip && \
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mv JBrowse-${JBROWSE_VERSION} /var/www/html/jbrowse && \
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rm JBrowse-${JBROWSE_VERSION}.zip && \
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RUN curl -LO https://github.com/GMOD/jbrowse/releases/download/1.12.5-release/JBrowse-1.12.5.zip && \
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unzip JBrowse-1.12.5.zip && \
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mv JBrowse-1.12.5 /var/www/html/jbrowse && \
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rm JBrowse-1.12.5.zip && \
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cd /var/www/html/jbrowse && ./setup.sh && \
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# Default FORCAST configuration for JBrowse. jbrowse/data/datasets.conf is bind-mounted for editing.
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echo -e "classicMenu = true\ninclude += data/datasets.conf\n\n[aboutThisBrowser]\ntitle = FORCAST" >> /var/www/html/jbrowse/jbrowse.conf

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