Skip to content

Commit 777dca7

Browse files
committed
Fix hardcoded gene assembly name in APEs
1 parent 7952bf7 commit 777dca7

File tree

1 file changed

+1
-1
lines changed
  • src/primer-design/classes

1 file changed

+1
-1
lines changed

src/primer-design/classes/APE.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -336,7 +336,7 @@ def buildGeneAPE(self):
336336
filetowrite.append("ACCESSION " + str(",".join(zip(*self.geneObject.exons)[5])))
337337
filetowrite.append("KEYWORDS ." + (self.geneObject.symbol).upper())
338338
filetowrite.append("SOURCE " + str(self.geneObject.Config.organismName))
339-
filetowrite.append(comment + ">dna:chromosome: GRCm38:" + self.geneObject.chromosome + "(" + str(self.geneObject.strand) + ")" + ":" + str(self.geneObject.sequenceStart) + "..." + str(self.geneObject.sequenceEnd))
339+
filetowrite.append(comment + ">dna:chromosome: " + self.geneObject.genome + ":" + self.geneObject.chromosome + "(" + str(self.geneObject.strand) + ")" + ":" + str(self.geneObject.sequenceStart) + "..." + str(self.geneObject.sequenceEnd))
340340
filetowrite.append(comment)
341341
filetowrite.append(comment + self.geneObject.symbol.capitalize() + " gDNA and 1000bp upstream and downstream flank")
342342
filetowrite.append(comment)

0 commit comments

Comments
 (0)