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Change iteritems to item()
See: pandas-dev/pandas#45321
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demuxEM/pipeline/pipeline.py

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Original file line numberDiff line numberDiff line change
@@ -91,5 +91,5 @@ def run_pipeline(input_rna_file, input_hto_file, output_name, **kwargs):
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# output summary statistics
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print("\nSummary statistics:")
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print("total\t{}".format(rna_data.shape[0]))
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for name, value in rna_data.obs["demux_type"].value_counts().iteritems():
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for name, value in rna_data.obs["demux_type"].value_counts().items():
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print("{}\t{}".format(name, value))

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