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var_.py
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"""
Numba 1D var kernels that can be shared by
* Dataframe / Series
* groupby
* rolling / expanding
Mirrors pandas/_libs/window/aggregation.pyx
"""
from __future__ import annotations
import numba
import numpy as np
from pandas.core._numba.kernels.shared import is_monotonic_increasing
@numba.jit(nopython=True, nogil=True, parallel=False)
def add_var(
val: float,
nobs: int,
mean_x: float,
ssqdm_x: float,
compensation: float,
num_consecutive_same_value: int,
prev_value: float,
) -> tuple[int, float, float, float, int, float]:
if not np.isnan(val):
if val == prev_value:
num_consecutive_same_value += 1
else:
num_consecutive_same_value = 1
prev_value = val
nobs += 1
prev_mean = mean_x - compensation
y = val - compensation
t = y - mean_x
compensation = t + mean_x - y
delta = t
if nobs:
mean_x += delta / nobs
else:
mean_x = 0
ssqdm_x += (val - prev_mean) * (val - mean_x)
return nobs, mean_x, ssqdm_x, compensation, num_consecutive_same_value, prev_value
@numba.jit(nopython=True, nogil=True, parallel=False)
def remove_var(
val: float, nobs: int, mean_x: float, ssqdm_x: float, compensation: float
) -> tuple[int, float, float, float]:
if not np.isnan(val):
nobs -= 1
if nobs:
prev_mean = mean_x - compensation
y = val - compensation
t = y - mean_x
compensation = t + mean_x - y
delta = t
mean_x -= delta / nobs
ssqdm_x -= (val - prev_mean) * (val - mean_x)
else:
mean_x = 0
ssqdm_x = 0
return nobs, mean_x, ssqdm_x, compensation
@numba.jit(nopython=True, nogil=True, parallel=False)
def sliding_var(
values: np.ndarray,
start: np.ndarray,
end: np.ndarray,
min_periods: int,
ddof: int = 1,
) -> np.ndarray:
N = len(start)
nobs = 0
mean_x = 0.0
ssqdm_x = 0.0
compensation_add = 0.0
compensation_remove = 0.0
min_periods = max(min_periods, 1)
is_monotonic_increasing_bounds = is_monotonic_increasing(
start
) and is_monotonic_increasing(end)
output = np.empty(N, dtype=np.float64)
for i in range(N):
s = start[i]
e = end[i]
if i == 0 or not is_monotonic_increasing_bounds:
prev_value = values[s]
num_consecutive_same_value = 0
for j in range(s, e):
val = values[j]
(
nobs,
mean_x,
ssqdm_x,
compensation_add,
num_consecutive_same_value,
prev_value,
) = add_var(
val,
nobs,
mean_x,
ssqdm_x,
compensation_add,
num_consecutive_same_value,
prev_value,
)
else:
for j in range(start[i - 1], s):
val = values[j]
nobs, mean_x, ssqdm_x, compensation_remove = remove_var(
val, nobs, mean_x, ssqdm_x, compensation_remove
)
for j in range(end[i - 1], e):
val = values[j]
(
nobs,
mean_x,
ssqdm_x,
compensation_add,
num_consecutive_same_value,
prev_value,
) = add_var(
val,
nobs,
mean_x,
ssqdm_x,
compensation_add,
num_consecutive_same_value,
prev_value,
)
if nobs >= min_periods and nobs > ddof:
if nobs == 1 or num_consecutive_same_value >= nobs:
result = 0.0
else:
result = ssqdm_x / (nobs - ddof)
else:
result = np.nan
output[i] = result
if not is_monotonic_increasing_bounds:
nobs = 0
mean_x = 0.0
ssqdm_x = 0.0
compensation_remove = 0.0
return output