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This method takes care of setting the serial.port preference to the
given value, as well as deriving the serial.port.file preference. This
should prevent duplicate code in the future.
Note that a second copy of this code lives in SerialUploader, but that
doesn't write to the global Preferences but a local prefs map. Since the
global Preferences are currently static, there is no way to share code
between these two copies.
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