fix Python errors in old code

Author: cbielow

docs/source/user_guide/charge_isotope_deconvolution.rst

@@ -124,6 +124,7 @@ Let's look at a very heavy peptide, whose isotopic distribution is dominated by
         use_decreasing_model,
         start_intensity_check,
         False,
+        True
     )
     for p in s:
         print("Mono peaks:", p.getMZ(), p.getIntensity())
@@ -179,6 +180,7 @@ state:
         use_decreasing_model,
         start_intensity_check,
         False,
+        True
     )
 
     print(e[214].size())